Protein Info for PS417_09620 in Pseudomonas simiae WCS417

Annotation: lipopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 663 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 459 to 482 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfs:PFLU2078)

Predicted SEED Role

"Extracellular Matrix protein PslE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U7J2 at UniProt or InterPro

Protein Sequence (663 amino acids)

>PS417_09620 lipopolysaccharide biosynthesis protein (Pseudomonas simiae WCS417)
MIEIRSFRDLLRLFFIFRRGFKLAAIAALVIILLGAFLLPAKYESTARLLVKPGRDSTLP
IEISNRQALVMPSTQRDPIVDEERLLTGRPIVRAVAEHYLEVIENAPPPEGFWKRTKYYV
KSGVGAVFDGVRVIMETVGIVEKTTPVERLAAGLEKNFEVSHAAGSTVMDISFKWSDPEI
AQAVVKDWVETYINERTEALGRKSLYAFYEGQVANSATEIKSYKEQILTHLNKIGAASIT
DRLEDLSERINVLRGETFNTTRLIASSDSAIQSTRTQLKGQPKEVTTVRQIALNPQQQDL
RRLLNQKLLEKADMMRTYTDNAPPVKALDASIRAMQMQVNNESNTVQASENRAPNTLEIH
LQRVLLDETSNNQALRTQLVQQQKQLLTLEAQRKEALEIEPELARLSRELNTTERNYALY
VDNLEKSRIDRELDNSQISNIAVIEEATLNPGRIFPKTLVMLLLAIPFAIVVGLLVIYLC
YLLDQRIHDGGLVERKFGLPLWTTLPELDTSTAQSTNAFNASIYRLYSLLQPDRIAEHGV
TLGLTSARHGEGVTFVVEQLRQLLHENGINVRVGGVEAAAPGEVVLLDASALLDNREAFI
NLRRADLIGLVVEARKSTVPVVEHALSILNTAFGKVDGIIINRRKFEVPGKVLQTIGKYR
GAF