Protein Info for PS417_09540 in Pseudomonas simiae WCS417

Annotation: penicillin-binding protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 630 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details TIGR03423: penicillin-binding protein 2" amino acids 20 to 607 (588 residues), 754.5 bits, see alignment E=4.1e-231 PF03717: PBP_dimer" amino acids 64 to 236 (173 residues), 156.1 bits, see alignment E=1.3e-49 PF00905: Transpeptidase" amino acids 268 to 604 (337 residues), 251.6 bits, see alignment E=1e-78

Best Hits

KEGG orthology group: K05515, penicillin-binding protein 2 (inferred from 99% identity to pfs:PFLU2064)

Predicted SEED Role

"Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Flagellum in Campylobacter or Peptidoglycan Biosynthesis (EC 2.4.1.129)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.129

Use Curated BLAST to search for 2.4.1.129

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UIX4 at UniProt or InterPro

Protein Sequence (630 amino acids)

>PS417_09540 penicillin-binding protein 2 (Pseudomonas simiae WCS417)
MPEPIPIKDHEKENRLVNKRLLACALLVIGITCALVARMYFLQVVQFDYHSTISENNRVH
VLPITPTRGLIYDRNGVVLADNRPSYNLTITRERTTDLKGELDAIVSLLHLPAEDRAVFD
KALKQARHPFVPVTLFYELTEEQIALLAVNEFRLPGVDVEPQFVRHYPLGAHFAHSIGYV
GRINEKESKALDSVEYRGTQSIGKTGIERFYESELHGHVGYEEVETNAQGRVLRVLKHTD
PIPGKNIVLSLDVHLQEAAEEALGDRRGSVVALDPQTGEVLAMVSKPSFDPNLFVTGISF
KEYAALHDSIDRPLFNRVLRGLYAPGSTIKPEVAIAGLDSGVVTAQTRVFDPGYYQLPDF
DHKYRNWNHSGDGWVDMDAAIMRSNDTYFYDLAHKLGIDRLHDYLAEFGLGQKVSLDMFE
ESAGLMPSQAWKRATRRQPWFPGETVILGIGQGYMQVTPLQLAQATALIANKGVWNRPHL
AKTINGVPPVDENPMPNVVLKDPRDWEQVNHGMQLVMHDPRGIARAAAQGAQYRIAGKSG
TAQVVAIKQGERYNREKTLERHRDNALFVGFAPAEHPKIVISVMIENGEAGGRVAGPVVR
QIMDAWLLDQEGHLKPQYATPAKAPGDPKV