Protein Info for GFF1874 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 40 to 59 (20 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 105 to 122 (18 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 215 to 372 (158 residues), 93.9 bits, see alignment E=4.5e-31 PF00990: GGDEF" amino acids 220 to 371 (152 residues), 110.4 bits, see alignment E=3.8e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (382 amino acids)

>GFF1874 hypothetical protein (Sphingobium sp. HT1-2)
VAEKRWQQRLKGWDGPFTAPVPDSAREAVLDTQYRRFHQALPLLCLLIMANAVAMALAVM
GDLPLWQQVTPPALIFLACAASLLRWRGVPIATDARVQARSLKRVAHVATASGLVAGLWA
VNAFTETEIYYCMVAPVFIGIGALVAATTLLSVPRAAIGAMGAAVLPILMKMALYDNLGV
RAMAVMMAIVTVMQANLVLGKFRETVAMLVSQRELARLAGTDALTGLDNRLSFMRAIEER
VERGAAFSVLLADLDGFKQCNDQHGHQAGDVLLTSLGGRLRALMPDAVSIARLGGDEFAL
LHDAETDVDALHRRMPGIRQAIAAPVGWQGRSLSVGGSFGIATFPQDGAEAAAVLHVADT
RLYADKRQRKGRRPGELQRQSA