Protein Info for GFF1852 in Variovorax sp. SCN45

Annotation: FHA domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 PF00498: FHA" amino acids 21 to 85 (65 residues), 46.6 bits, see alignment E=1.9e-16

Best Hits

KEGG orthology group: None (inferred from 68% identity to dac:Daci_4369)

Predicted SEED Role

"FHA domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (312 amino acids)

>GFF1852 FHA domain protein (Variovorax sp. SCN45)
MALFRNKRDGRSIVLRPVHAFGRRPSACQTVLKAPDVSQVHALVRWNSMAWEIVDQSRNG
TTLNGERLPNGRWTALTLGAEVRMGLGDELAWTVQDLAPPVTCLFSGQGLGEPVVLNPRE
TLLPDAQQPEVNVYFHEGRWLLEHIDGIEHLSDGATVSTSRGAWEFVLCDDLESTSENAI
APAGPKAVDVALHFDVSQDEEHTSLSLLADGKSVSLGERIHHYTLVTLARVRQQDAERGV
PPQSQGWIGLEDLSRMLGVEPSYVNIQIFRAKHQILNALPPSLGEPPLVERRRGNVRLGD
YRFEIRGGAHRV