Protein Info for GFF1848 in Sphingobium sp. HT1-2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 970 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07715: Plug" amino acids 56 to 170 (115 residues), 63 bits, see alignment E=3.6e-21 PF00593: TonB_dep_Rec_b-barrel" amino acids 407 to 931 (525 residues), 131.2 bits, see alignment E=1e-41

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (970 amino acids)

>GFF1848 TonB-dependent receptor (Sphingobium sp. HT1-2)
MRGRASSLFLTGTALLTMASAAAAQEATPPTDAQSGQASAQDIVVTGTRIVRDGYTAPTP
VTVASTEELVKATPSNIPDALNKLPQFQNSSSPSRSSMNFANTAAHGNVLNLRGVGPLRT
LILFDGQRVAPTTYLGTVDVNVIPNLLIQRVDVVTGGASAAYGSDAVSGVVNFVLDKKFT
GLTGVAQGSTSQRGDNQGYRFGIAGGFDFGGDRGHLLLSAETFKNNGMLRSDRKLGRGAY
SYVGSTVGCTNPNAAADPTACSPGGTLNPYMIASGVTLSAASEYGKITSGPFTNYRFDAN
GALVPFSNGTATGSPGYFVGGDGYAISPDTQAVAPLHTYQAFGRASWDFTPDVTGYVQGS
FSRSDLSYTSLANSLVPPTAATLYSGNPYLPAELQAAFSPTSQSITLARYGANSPRPHTT
ERTDYWMVNAGFEGTLADKWKWNVAFNHGDSNFSVAQEGVWDWQHFYAATDAVRNGSGQT
VCRASLSADPTIAARYANCQPFNLLATGDAYASQPGYDYVVGTSRYRARIWQNALSASIQ
GALFDLPAGPVDVALGAEYRRQSLRLTSNANPADLDTTAERSAYFAGLRGVPSSVYHYWL
TNVGEASGDLSVKEVFGELAVPLLKDQPFAQELSLNAAGRYTDYSTSGSVKTWKLGATWK
PISDLLLRGSVSRDIRAPNLFELFAGDQSAISLLVDPVSGITANVPQVTGGNPDLKPEKA
DTLTFGAVITPSFLPGLSLSVDYYRIKIKDAIGTLSLTQIVNNCSQSGGTAPECALVTRD
TPTSFPSQIRVAPANIAFLETSGIDFDASYRTELAGGNLGLRLYASYLDTYQTQQSSTAP
VLEYAGTSTISSTPEGRPRWRGTLSVNYEIGRVGVFLNQQLIGKVKLGIPGGLENGLGQT
IGAVDYTDMTLSYRLPVANGHVEFFGTVNNLFDKDPPLIPGTIPGVNIATNFALYDTVGR
AFTGGIRFKF