Protein Info for GFF1843 in Sphingobium sp. HT1-2

Annotation: FIG00883918: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 29 to 50 (22 residues), see Phobius details amino acids 59 to 83 (25 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 116 to 139 (24 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 246 to 264 (19 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details amino acids 337 to 361 (25 residues), see Phobius details amino acids 372 to 394 (23 residues), see Phobius details amino acids 406 to 424 (19 residues), see Phobius details PF00083: Sugar_tr" amino acids 25 to 209 (185 residues), 81.7 bits, see alignment E=8.2e-27 amino acids 228 to 429 (202 residues), 49.1 bits, see alignment E=6.2e-17 PF07690: MFS_1" amino acids 44 to 376 (333 residues), 77.5 bits, see alignment E=1.5e-25

Best Hits

KEGG orthology group: K03761, MFS transporter, MHS family, alpha-ketoglutarate permease (inferred from 69% identity to atu:Atu4017)

Predicted SEED Role

"FIG00883918: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>GFF1843 FIG00883918: hypothetical protein (Sphingobium sp. HT1-2)
MEHVASLSPASLSRQDRLKSILGGSIGNLIEWYDWYVYSAFTLYFAPVFFPSDDSTAQLL
NAAAIFAVGFLMRPIGAWAMGIYADRRGRKAGLTLSVMMMAGGSLMIAAIPGYASIGVAA
PALLLLARLMQGLSIGGEYGASATYLSEMAQSDQRGFFSSFQYVTLIAGQLLALCVLLLL
QLFLTEHQLESWGWRVPFVIGGVMAVGVYRLRRGLKETEAFEESAAVSEQPRSSGLNLIR
RHPREVLLVMALTAGGTLAFYAYSTYMQKFLVNSAGFGRQTATAIMASALFIYMLLQPMA
GWLSDRIGRKPLLIGFGISGVLFTTAIFTALERVTSSFGAFLLVLGGLVIVTGYTSINAI
VKAELFPANIRALGVALPYALANTLFGGTAEYAALWMKHAGMEDGFYWYVTAMIALSLIV
YLRMPDTRKTSQI