Protein Info for GFF1842 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13517: FG-GAP_3" amino acids 54 to 115 (62 residues), 50.7 bits, see alignment E=3.4e-17 amino acids 159 to 219 (61 residues), 43.6 bits, see alignment E=5.5e-15 amino acids 209 to 277 (69 residues), 51.6 bits, see alignment E=1.8e-17 amino acids 266 to 327 (62 residues), 56.2 bits, see alignment E=6.3e-19 PF07593: UnbV_ASPIC" amino acids 425 to 488 (64 residues), 37.7 bits, see alignment E=2.3e-13

Best Hits

KEGG orthology group: None (inferred from 58% identity to hne:HNE_0222)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (502 amino acids)

>GFF1842 hypothetical protein (Sphingobium sp. HT1-2)
MPSLNRTLCHILPLMLLCQPATAQDAAPPAEPPFTSIQPGDFAIAGSLSNSWADFDNDGD
LDLVVSLKGGDIRLYRNDNGTFVNVGPELGLPTSGPEMRGVAWGDYDGDGWIDLLGGATM
PGEQSLVFRNEGGRKFTNVAPELGLTIPNRSARQTSWVDYDNDGDLDVYAANRIGPNSLY
RNDKGKFVQVLAGTGVSDSRPTVGACWFDYNRDGFLDVFLANQSGAADALWRNNGDGSFT
DVAPELGLDNPGRSKEEGGVGCAVGDYDNDGYLDLFVPNYGVNALYHNNGDGTFTNVAKE
MGVGIDNHAVGAVWGDYDNDGYLDLYVTSYHGPRDQQQPRDSLFHNEAGKGFRQVLAETS
QLNVGDHGVQWVDYDRDGALDLSVMRGYTSQGGHFLFHNDLDRAAARRSLSVTLLDAKGR
FTRMGAEVRLYDKAGKILATRQLSTGDGYNSENAAPLHFGLKTMDAVKVEVTWMSRKGRK
IQTLPNVDPAKYAGKSLVIRER