Protein Info for GFF1841 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 76 to 93 (18 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 164 to 189 (26 residues), see Phobius details amino acids 209 to 233 (25 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 272 to 290 (19 residues), see Phobius details amino acids 296 to 315 (20 residues), see Phobius details amino acids 333 to 354 (22 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 347 (334 residues), 160.1 bits, see alignment E=7.3e-51 amino acids 213 to 377 (165 residues), 62.3 bits, see alignment E=4e-21 PF00083: Sugar_tr" amino acids 45 to 182 (138 residues), 38.6 bits, see alignment E=6.7e-14

Best Hits

KEGG orthology group: None (inferred from 98% identity to sec:SC2283)

Predicted SEED Role

"Putative permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>GFF1841 Putative permease (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKEKLWTKDFWAITIVSFIIFFVFYVLLTLLPIYIADRLHASADKAGLLVTCFLAAAIVI
RPFAGQWVGKYSNKKILVLSSLAFLVITALYPVCHSIESLLFIRVLHGITFGVITTVKGT
ISARLIPASRRGEGISFFSLAMGLAMVVGPWIGLNMARWDAFTAAFWLCSAVAALGIVLS
LIVTVPPVIRHADGSKPNLGFSAMFDRAALPFALVTFFMTFSYAGVSAFLALYARELDLM
AAASNFLLCYAILLMICRTFTGNICDKKGPKYVVYPCLLAFTIGLVALGYTNGSIMMIIS
GGLIGIGYGSVTPVFQTQIISSVEPHKIGVANSLFFNAMDAGMAIGAFIMGMMVESVGYR
MIYVAGAVLVVLAGALYAVQMKKRGVMPLVSTSELH