Protein Info for GFF1835 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 15 to 34 (20 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 102 to 120 (19 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 191 to 212 (22 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 223 to 383 (161 residues), 163.4 bits, see alignment E=1.9e-52 PF00990: GGDEF" amino acids 224 to 380 (157 residues), 151.7 bits, see alignment E=7.8e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>GFF1835 hypothetical protein (Xanthobacter sp. DMC5)
MSLSALFFSTLDVRTLFRLMSLADFVVCLLLLGYRETGPKQRLIRRFVFARVLHGVACIL
ISLRGDISSLVSVYVANVTIFFSFALEVSTIVDTREQRRGVTRLLFGVATLGSVVFVLAA
TTPGLYVGYAAIIVSALFGIAFAALAGDGEGSRLQRIIAGFYLLVSVSFLLRAYAGFGAG
MGVFDAPPVQSFGLLVMFGYCVGGGVGFLLLLKEDVDRRLLVAATIDSLTGILNRRAFFE
AARERLARAAGRGEPVSLLLVDIDHFKRVNDTFGHPAGDEVLAAVTERLRRALRAHDLFG
RVGGEEFAVLLPEAEAEAIVVAERMRLAVRGLTTPATSRLDCSVSIGCASVAAGERATIE
TLFRRGDAGLYAAKRAGRNRVVAAGADLATVEMTAEMAGMPAALRPLDGAALSFSNEEGR
GVPRP