Protein Info for GFF1828 in Variovorax sp. SCN45

Annotation: phosphodiesterase I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF16655: PhoD_N" amino acids 61 to 150 (90 residues), 86.8 bits, see alignment E=1.2e-28 PF09423: PhoD" amino acids 164 to 573 (410 residues), 264.7 bits, see alignment E=1.2e-82

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (613 amino acids)

>GFF1828 phosphodiesterase I (Variovorax sp. SCN45)
MERRSFLRGGLFYTVAAAAPVLTACGGGNDGTVIPPFTPPSPAPAPAPAPAEPTGRYTFA
QGVASGDPKESSIVFWTRCVRLDAAGANVALRLEVSDNADFSTTVARVDLQATAKFDYTV
RAKVTGLAADTRYFFRFVAGSDRSPVGRTRSAPAANSTRKQLRFAWFTCQDWSINHWGAL
DLMAAEDDLDFTVHVGDYVYETVGAKFQAGVAEPAHTAIKLPNGVALADGSVYANTVDDY
RALYRTYRGDPRLQGLHAKFPLIAIWDDHEFSDDCWQDHQTYTNANTQQTARRRSASQAW
VEYMPVDFGDVSFDLDNPAYDNIKIYRDFRFGPLLHLVMTDERLYRDDHVISEALVAQQT
GADPVNGNSSIGSRYFAPQSTLLQLEAMRTQELGRVPSILGPTQTAWWKNTLKGSTATWK
VWGNEVSLSRMWIDMRQAAPAPYNQLYVVNCDAWDGYPAHKADLMGYLKAQNIRNVVAIT
GDLHAFQCGVIRDLPDPATGTPVMVDFLCAGISSSSFYSYIAAGAKGSPLEALTATPTDF
EAVMSGNNPDLVFADHNAQGYASATVTAQEFAVVFSKVRPLGGDGKAPANPLQKRTRIRL
AAGTTTPVIEDNV