Protein Info for PS417_09245 in Pseudomonas simiae WCS417

Annotation: recombinase RdgC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF04381: RdgC" amino acids 1 to 300 (300 residues), 384 bits, see alignment E=2.5e-119

Best Hits

Swiss-Prot: 99% identical to RDGC_PSEFS: Recombination-associated protein RdgC (rdgC) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K03554, recombination associated protein RdgC (inferred from 99% identity to pfs:PFLU1877)

Predicted SEED Role

"DNA recombination-dependent growth factor C" in subsystem CBSS-562.2.peg.5158 SK3 including or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TW78 at UniProt or InterPro

Protein Sequence (306 amino acids)

>PS417_09245 recombinase RdgC (Pseudomonas simiae WCS417)
MWFKNLLIYRLTQDLPVDAEALEAAMATKLARPCASQELTTYGFVAPFGKGEDAPLVHVS
GDFLLIAARKEERILPGSVVRDALKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAF
IRRSSTFAAIAPKQGLILVNSASPKRAEDLLSTLREVIGTLPVRPLTVKTAPTAIMTDWV
TTQKPADDFFVLDECELRDTHEDGGIVRCKRQDLTGEEIQLHLTTGKVVTQLSLAWQDKL
SFMLDDKMTVKRLKFEDLLQDQAEQDGGDEALGQLDASFTLMMLTFGDFIPALVEALGGE
ETPQGI