Protein Info for PS417_09215 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 42 to 64 (23 residues), see Phobius details amino acids 76 to 93 (18 residues), see Phobius details amino acids 98 to 123 (26 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 208 to 229 (22 residues), see Phobius details amino acids 244 to 264 (21 residues), see Phobius details amino acids 272 to 291 (20 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details amino acids 367 to 385 (19 residues), see Phobius details PF07690: MFS_1" amino acids 15 to 344 (330 residues), 68.4 bits, see alignment E=5.5e-23 PF00083: Sugar_tr" amino acids 42 to 117 (76 residues), 24.4 bits, see alignment E=1.3e-09

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfs:PFLU1871)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U7D1 at UniProt or InterPro

Protein Sequence (397 amino acids)

>PS417_09215 MFS transporter (Pseudomonas simiae WCS417)
MSNPISQRSSLVFLAITLLTFLAASSAPTPLYHLYQEGLHFSAGMLTLIFGVYALSLLVA
LLTVGSLSDHLGRKPVIFTALILNMLAMLLFINEGSVAWLIAARTLQGFATGMATAVLGA
ALLDTDRQQGPLVNSVAPLLGMACGAMGSSLLVEFAPLPTQLIYCTLFVLMLLQAVYVWR
LPESVSRIPGALASLRPTLHVPPQARRALWLSLPVDVAVWAMGGFYLSLAPSLVRTATGS
TSNLIGGGLVAVLTVSGALMIFTLRNRPADKVLRLGAGLLAVGVALILTAVHSASVLLFF
IATLIAGSGFGAGFLGALRSVVPLALPHERAGLMSAFYVLSYLAFCLPSLLAGNLIRRFG
LIVTTDGYGAVLILLALGALVGLLWQDSARARATTGG