Protein Info for GFF1811 in Sphingobium sp. HT1-2

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 47 to 66 (20 residues), see Phobius details amino acids 72 to 96 (25 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 173 to 195 (23 residues), see Phobius details amino acids 208 to 228 (21 residues), see Phobius details amino acids 259 to 283 (25 residues), see Phobius details amino acids 295 to 317 (23 residues), see Phobius details amino acids 325 to 344 (20 residues), see Phobius details amino acids 352 to 375 (24 residues), see Phobius details amino acids 389 to 408 (20 residues), see Phobius details amino acids 414 to 434 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 38 to 225 (188 residues), 42.4 bits, see alignment E=4.5e-15 PF07690: MFS_1" amino acids 47 to 402 (356 residues), 49.8 bits, see alignment E=2.5e-17

Best Hits

KEGG orthology group: None (inferred from 92% identity to sch:Sphch_1099)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (443 amino acids)

>GFF1811 Uncharacterized MFS-type transporter (Sphingobium sp. HT1-2)
MTSQAIAFTSSSLEDDARKINARDHSIAPGDISIGVIIGRTSEFFDFFVYAIASVIVFPN
LVFPYVDALTGTLYSFAIFAVAFITRPIGSLIFMAIDRRYGRGTKLTAALFLLGGSTAAI
AFMPGYATIGHYAAVVLVILRAAQGIALGGTWDGLASLLSLNAPPHQRGWYAMVPQLGAP
LALLVASGLFAFFLLTLSEADFLDWGWRYPFFVAFAINVVALFARLRIVVTHEFERLFEQ
KDLVPSQVLPTVKAEGRNIIIGAFAPLASFALFHMVTVFPLSWVVLFTDQPIDRFLVIEM
IGASVGLLAIVVSGFIADQIGRRSLLGWSALGIAIFAVVAPLLLNGGDLGEVAFMILGFM
LLGLAFGQSSGVVASNFATEARYTSSALTSDLAWLVGAGFAPLLALLLSVKFGLAASGIY
LLSGAVATMVALYVNKELAARDR