Protein Info for GFF1797 in Variovorax sp. SCN45

Annotation: FIG022199: FAD-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 PF00890: FAD_binding_2" amino acids 12 to 48 (37 residues), 23.6 bits, see alignment 1.2e-08 PF01494: FAD_binding_3" amino acids 12 to 342 (331 residues), 83.4 bits, see alignment E=7.8e-27 PF04820: Trp_halogenase" amino acids 12 to 99 (88 residues), 43.4 bits, see alignment E=9.1e-15 amino acids 100 to 364 (265 residues), 64 bits, see alignment E=5.1e-21 PF12831: FAD_oxidored" amino acids 12 to 176 (165 residues), 30.9 bits, see alignment E=7.4e-11 PF13450: NAD_binding_8" amino acids 15 to 48 (34 residues), 32 bits, see alignment 4.9e-11

Best Hits

KEGG orthology group: None (inferred from 95% identity to vpe:Varpa_4574)

Predicted SEED Role

"FIG022199: FAD-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (445 amino acids)

>GFF1797 FIG022199: FAD-binding protein (Variovorax sp. SCN45)
MTPGPFTSTDPDVVVIGGGPSGSTVAALLADKGHDVVLIEKAQHPRFHIGESLLPMNMPL
FDRLGVRTEVEAIGLRKHGAEFVSPWHDHSSHFDFGQAMDKSFPYAVHVRRSEFDELLFR
HAGNRGARTFEGQRVTGVDMDAGKGTPDNRPLVKVKADDGTETSWRPRFVIDASGRDTLL
SNQFDAKQRNRKHASAALYGHFANAERRPGRFEGNISLFWFDHGWFWYIPLKDGTVSVGA
VASPAYFKRRKGSLEEFLMETIALAPKLAARLKNATLMEGATSTGNYAYDSKFCRGDRFM
MVGDAYAFVDPMFSSGVYLAMNSGFEAATAADHWLKGEAKEAERAFRHYEKVMKRGPKMF
SWFIYRITSPAIRRLFMAPRNIWRMQEALLSILAGDLFRDTPIGPRFWGFKVTYYASCLG
ILPQAVKTWAWRRRNLKESLDSVKT