Protein Info for GFF1792 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 25 to 41 (17 residues), see Phobius details amino acids 62 to 86 (25 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details amino acids 275 to 292 (18 residues), see Phobius details PF14378: PAP2_3" amino acids 97 to 284 (188 residues), 111.3 bits, see alignment E=2.7e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>GFF1792 hypothetical protein (Sphingobium sp. HT1-2)
MLMTILLAAAATVQSFHVDIVDLAPLYVAIIIFLASGLYILRRTPSGNAAMAVREGSGQR
LGHILVLTGLFYFMAATAALGCAALARTALPYADTMLAAADRALYFDWLAMMAWFQASPR
IATLLIHAYAAINWQPQLAILLLCGLGHPALAYRFMTAWGMCLLLTIVMFPFFPAVAAFH
HYNVDPAQMPGATAWASWHLEALMEELRSGAKATLDSDALTGIITMPSFHAASAILLIFA
FWPFPWLRWPFLLLNMVMFASAVPVGGHYLVDTLGGLMLALIAIGTAIAVHGRGEDIRLD
WKTIGHQVRRREAGLASA