Protein Info for GFF179 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 transmembrane" amino acids 24 to 64 (41 residues), see Phobius details amino acids 67 to 89 (23 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details amino acids 255 to 280 (26 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 312 to 330 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 46 to 322 (277 residues), 135.5 bits, see alignment E=1e-43

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 77% identity to pgv:SL003B_2520)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (347 amino acids)

>GFF179 hypothetical protein (Xanthobacter sp. DMC5)
MRIATAKETYIADEGLLVTSTQRAWMGVLLATLVLAPFVLNQYWLYLACLVAINVASATG
LNILTGYTGLVSLGQAAFMAVGAYTVAFFEGQVGTPFLLNILAAGLVSALVGVLVGIPSL
RVKGLYLAIATIAASVILHFVFTHWVSVTGGVRGINVVPARLFGLELASPFALYFVIVPI
TCLMVLGAANLFRTRIGRAFIAIRDRDISAEVLGIPLLRYKLMSFALSSFYAGVAGGMWA
YFFRVVTPESFPFATSIFFLAAVIVGGLGTIIGSVLGAAFMTLVPELLKYVVDWLAPIFP
NAGAALSPVRTIVFGALIILFLVFEPHGLAEMVRRARRFFHLWPFRT