Protein Info for PS417_09015 in Pseudomonas simiae WCS417

Annotation: AMP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 PF00501: AMP-binding" amino acids 13 to 386 (374 residues), 256.2 bits, see alignment E=4.8e-80 PF23562: AMP-binding_C_3" amino acids 428 to 533 (106 residues), 30 bits, see alignment E=6e-11

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfs:PFLU1843)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TW60 at UniProt or InterPro

Protein Sequence (549 amino acids)

>PS417_09015 AMP-binding protein (Pseudomonas simiae WCS417)
MPVAFRLPLQVFFEREARHPRQTFLVQPVGDGEVQSLTWGDVGHQARCAANWLRARELPQ
GSHIALISKNCAHWIIADLAIWMAGHVSVPLYPNLTADSVAHVLTHSEAALVLIGKLDDW
PAMAPGVPKDVPTISLPLCPSGEFDFSWADLQASSPIQDDPAPAASDLATIIYTSGTTGL
PKGVMHSFGALGFAATRGTALFGLGEGDRLLSYLPLCHVAERMFVEMASIYTGQTVFFAE
SLETFLVDLRRARPTALFGVPRIWTKFQMGVYAKVPAKRLDALLRLPFIGKRVGHKVLAG
LGLDALRIALSGAAPVPEALLRWYRRLGLDVLEVYGMTESCGYSHVCRPGQQTLGWIGLP
CPGVEVRIDPAGEVQVRSGATMLGYYKDPQKTAETITADGFLRTGDKGEQDTEGRLRLTG
RLKEIFKTSKGKYVAPAPIENRLAEHARIEQVCVVGDGLSAPIGLCVLSAVEQDPQALRS
SLERWLVQVNQTLDKHERLRQLVVVKDSWAVENGFLTPTLKIKRNAIESTYGEYFQRWSE
RSETVLWQD