Protein Info for GFF1771 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF11737: DUF3300" amino acids 87 to 250 (164 residues), 140.5 bits, see alignment E=3.1e-45

Best Hits

Predicted SEED Role

"Ser/Arg-related nuclear matrix protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (662 amino acids)

>GFF1771 hypothetical protein (Xanthobacter sp. DMC5)
MGGISVRNCVKGRTGNLSRIAVAAVFGWSTIYPALAQTPPPGPQGAQGYPQGGPPAVQPG
AVPPAPQGQPLPPPQAGDQVQPAYSLSELEYLLGPVALYPDPLLAILFPATLFPEQLVEA
YNWIIANPGPVQERNFTAVDAFNWDSSVKALVRFPDVIILFHEHMEWAESLGLAFSTQPQ
DVSNTIQMLRAKAQAVGNLQTTPQQVVTTQEVPTSSGGGSGPARTIYIQPADPERIYVPA
YDSSEVFTTFATGALAFGAGVLVGSYWNNNWGWNNRPWNSVWVVPPRWVRPPYWGPGWGG
GRPPVWGPGPWRPGRPGVPPPVRPGWPGGPGGPGGPGRPGWPGGPGGPGGPGWPGGPGGP
GGPGRPGWPGGPGAPGGPGGPGRPGMPGYPGGPGVGPGRPGMPLVPGAPGRPGYPGGPGR
PGTPGYPGGPGVGPGRPGMPVVPGAPGRPGYPGGPGMGPGRPGYPGTPGVGPGRPGRPGM
PGNIPGQPGAGPGRPGYPGTPGVGPGRPGRPGMPGNIPGQPGAGPGRPGYPGTPGVGPGR
PGRPGQPGVPGAGPNRPGYPGAGPNRPGYPNAGPNRPNRPSAQPNRPANVRPQNRPQQMR
PQQRPQQMRPQQRPQQMRPQQRPQQMRPQQRPQQMRPQQMRPQPRAMPQRAAPQNRPRPG
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