Protein Info for GFF1769 in Sphingobium sp. HT1-2

Annotation: Similar to phage capsid and scaffold / Gene Transfer Agent (GTA) ORFG12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 788 PF23844: NCTSP_N" amino acids 24 to 221 (198 residues), 307.1 bits, see alignment E=5.1e-96 PF23845: TIM-barrel_NCTSP" amino acids 226 to 570 (345 residues), 556.4 bits, see alignment E=3.6e-171 TIGR02217: TIGR02217 family protein" amino acids 583 to 787 (205 residues), 192.4 bits, see alignment E=3.5e-61 PF09343: DUF2460" amino acids 585 to 787 (203 residues), 245.3 bits, see alignment E=6.6e-77

Best Hits

KEGG orthology group: None (inferred from 80% identity to sch:Sphch_0212)

Predicted SEED Role

"Gene Transfer Agent (GTA) ORFG12b"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (788 amino acids)

>GFF1769 Similar to phage capsid and scaffold / Gene Transfer Agent (GTA) ORFG12 (Sphingobium sp. HT1-2)
MSGIDYWLADGGPAHGQGQESRFIKRFDPMWWTVNFPRPMMASVVTTGPDAASTGSGQGL
RVDAVFYGSGDLAGLIWDAADQWSHPLLAYETARDFRQCVLRFRWRSGGLRRLDETHGPT
LTIEGRDADGAPRAWYVRLWNYASGGPEDAEIVLDFAALEGGFRLPDDSDPVWAGDVDRM
FISLVPPAYDAGDTGFVVPVEGWAELSDIVCDGAGSVLAVGDVMLPEHGLSMATGYDDSF
NQTPERLVAAIHALGYRGAINHYVGMSHYFRLERLGGGLYVSLAGGVLNAPCAAWHADFA
RRAKAMGLGVIWSLSYELFDAHCWNDWKQRAENGDPALTGWSPPSTLLSPAHGGAMGYLQ
AVAGAFVSISLDAEIPILFQVGEPWWWVMPGDGRICIYDDAARAALGGSPVSIPDVRGTL
SAAQCDLLDHAGALLAASTAALCGAVRALAPDAVTHLLAYLPTVLDPLAPEAKRANMPVG
WAAPAFDVLQLEDYDWVTQGRPRLTERGVALATARLGYPVTEQHYFAGFVLLPEQADQWR
AIAAAAQASVGRGTAATYIWALPQVARDGFTCFRLDGEDAMQAFDDVRFPIAIGREASVA
PAFSTQVAESPSGHERRSSDWADARLSFDAGPGVRSDADIADLIAFFRARRGAARGFRFT
DPYDDRSGPPGIAPGPLDQRLGSGDGVTTDFVLMRHYGGGADAQARRITRPVAGTIRVAI
DGAEQADGWQHVGLGVIAFDAAPGDGALITAGYRFDVPVRFAEDRLEINRATFAAGEAVS
VPLVEIRE