Protein Info for GFF1766 in Sphingobium sp. HT1-2

Annotation: Gene Transfer Agent host specificity protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 730 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13550: Phage-tail_3" amino acids 234 to 388 (155 residues), 61.5 bits, see alignment E=9.2e-21 PF23666: Rcc01698_C" amino acids 481 to 575 (95 residues), 93.1 bits, see alignment E=1.2e-30

Best Hits

Predicted SEED Role

"Gene Transfer Agent host specificity protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (730 amino acids)

>GFF1766 Gene Transfer Agent host specificity protein (Sphingobium sp. HT1-2)
MATMVLTAVGTALGGPIGGAIGGLIGNVLDREVLFKAKGREGARLSDLQLQTSSYGTQMP
RLFGRMRVAGTVIWATDLREIRTKSGGSKGQGSSTSYSYSASFAVALSARGVRSIGRVWA
DGNLLRGAAGDFKTQVGAFRLHDGDEDQAPDPLIASAQGAGMTPAHRGIAYVVFEDLLLS
DYGNRIPSLTFEVEADAGAVTIDAIVGALSEGQMGCAAAEEVEGFAASGADLGEAIAPLV
EAYGLGLCGEGAQLAGDAGPAVASLDPATRCSRINGRAIDPVERSSAGADSVALALSVRH
HDPARDYQAGVQRVTRPGPGRIERGIELPAVLSGGAARSLARQRLDGIWAGRDRMTVRGD
WRALELEPWMIVTLADAPGLWRIEEREWEAMAVRLALRRLAGTGGRAPGSVSSGQIVRQL
DAPHGPTWLMLADLPRLTDGVASGPQLVAAASGGPGWRSAALYALDAGGTAEPIGRTAPR
AVMGQIDAALPPGSTLLLDMVNSLSVTLLAEDMELASADGAALAQGRNLCLVGQELIQFG
RAVRTGPASYRLEALRRGLRGTEWAMAGQEAGTPFLLIEADRLVDPLAMAGMEGDIGAAM
GLLAIGIGDVEPATAEVMIGGAALVPPAPVHLNAAPDGAGGWRIGWTRRSRAGWRWSSGG
DVPLAEESERYELRVLEGDRLVRRAEVTEPGWTYDVAMIAMDGVSGPLSMDVRQVGTRVL
GRPGMIEMLL