Protein Info for GFF1754 in Sphingobium sp. HT1-2

Annotation: putative oxidoreductase, nitronate monooxygenase family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 PF03060: NMO" amino acids 83 to 233 (151 residues), 64.7 bits, see alignment E=5.1e-22

Best Hits

KEGG orthology group: None (inferred from 84% identity to sch:Sphch_1109)

Predicted SEED Role

"Dioxygenases related to 2-nitropropane dioxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>GFF1754 putative oxidoreductase, nitronate monooxygenase family (Sphingobium sp. HT1-2)
MTLPASLQGRLSLPLIGSPMFIISQPELVIAQCRAGIVGAFPSLNARPSGTFEAWLQQLG
AELTDQDAPFAVNLIVHRTNARLEEDLALCVKYKVPIVITSLGAQEKVNEAIHSYGGIVL
HDVINNVFARKAIEKGADGLIAVAAGAGGHAGTLSPFALVQEIREWFDGPLALSGAIATG
RSIAAARMMGADLGYMGSPFIATTEANALDAYKDMIVDSASADIVYSDVFTGVLGNYLRP
SIVASGLDPDKLPKAADMDFASLAGDKKAWRDVWGAGQGIGAIKAVQPAGAFIAQLKAEY
QAAVSGFMA