Protein Info for GFF1751 in Xanthobacter sp. DMC5

Annotation: Dimethyl sulfoxide reductase DmsA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF04879: Molybdop_Fe4S4
  • amino acids 18 to 72 (55 residues), 34.6 bits, 2.2e-12
• PF00384: Molybdopterin
  • amino acids 75 to 486 (412 residues), 138.6 bits, E=4.1e-44
• PF01568: Molydop_binding
  • amino acids 588 to 692 (105 residues), 72 bits, E=6.1e-24

Best Hits

KEGG orthology group: None (inferred from 83% identity to xau:Xaut_2325)

Predicted SEED Role

"Anaerobic dehydrogenases, typically selenocysteine-containing" in subsystem Anaerobic respiratory reductases

MetaCyc Pathways

• formate oxidation to CO₂ (1/1 steps found)
• superpathway of C1 compounds oxidation to CO₂ (8/12 steps found)
• oxalate degradation VI (2/4 steps found)
• purine nucleobases degradation II (anaerobic) (16/24 steps found)
• oxalate degradation III (2/5 steps found)
• purine nucleobases degradation I (anaerobic) (6/15 steps found)

Protein Sequence (706 amino acids)

>GFF1751 Dimethyl sulfoxide reductase DmsA (Xanthobacter sp. DMC5)
MNVHAPTVSHTAHSPVATHPSVCPHDCPSVCALKVDVMADGRIGRVHGSKDQPYTAGVIC
AKVARYAERANHPDRLTHPLLRTGPKGSGQFTRISWDEALDRVAEGLLKAEREHGAESVW
PYYYAGTMGLVMRDGINRLTHVKRYSRFFSSICVNPAWSGYMAGAGRIAGVDPREMAASG
LITLWGTNAVSTQVNVMTHAIHARKRHGAKIAVVDVYRTPTMEQADIPLLIRPGTDGALA
CAVMHVLFRDGFADRAYMDQYARDAAALEAHVATRTPEWASALCGLPVAEIEAYARLVGT
TPASYFRIGYGFSRSRNGAVNMHSVASIPVVAGSWQHLGGGALHSMSGTYGWRKKMIEGL
DRLDPTVRALDQSRIGPILMGEEDALAGGGKVAALLIQNTNPVAVAPEQEKVKRGFARED
LFVAVHEQFMTDTARMADIVLPATMFTEHDDIYGAGGHPHIQIGTKLVEPPGECRTNHDV
ICALASRLGAEHPGFAMTARELIDWTLRESGRGPVEALEEARFMDVGQDFRAAHFLDGFG
HRDKRFHFAVDWANLSFPAPGKFGPVADMPALPDHWAVIEEADAEHPFRLVTAPARNFLN
SSFTETPTSQEREGAPSLLVHPEDAAALGVAEDDLVAVENPRGRVELRVRLFDGLRRGVV
VSEQIQPSGAHRGGRGINTLTGADPVAPVGGAAFHDNKVRVVKIEV