Protein Info for GFF1747 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 55 to 78 (24 residues), see Phobius details amino acids 90 to 108 (19 residues), see Phobius details amino acids 145 to 175 (31 residues), see Phobius details amino acids 242 to 266 (25 residues), see Phobius details amino acids 272 to 292 (21 residues), see Phobius details PF00664: ABC_membrane" amino acids 22 to 263 (242 residues), 30.4 bits, see alignment E=3.2e-11 PF00005: ABC_tran" amino acids 336 to 478 (143 residues), 69.5 bits, see alignment E=4.5e-23

Best Hits

Predicted SEED Role

"Transport ATP-binding protein CydC" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (541 amino acids)

>GFF1747 hypothetical protein (Sphingobium sp. HT1-2)
VNPIRIALDKATGSATLLRRATLCAVIAALAGIALLALAGWFLTAAAMAGAAGTVAVQAF
NYLVPSAAIRLLAILRTVSRYGERLWSHRAALEAMGGLRASLFARLAAQDSRTALPLSSG
DAAARLTGDIDALEDLVVRRPSRIAGLMAALAGVMLAANGGWLSALLLAVMLAALPPLLR
ILARRLTEGPAQQAADALGALRARYVELASARAEIAAYGLGDRVIAELAPLTRRLDRARA
RLFIGEGVQAALLAAYSALAVMLVLLGADAPAPLVALALLASAGAVEAMAGLSRTAFRQA
SVDAGLARLAALDALPLDDAPAPSAATAQVIRLGDVELRPGARVAVTGRSGSGKSLLAEG
LAGLRPVTADVTLGGHPLAACSGTELRDQFALSPQDAPMLAGSIADNLRLARPGIDAADM
ADALHVACLDQRIASLPGGIDYRLGEAGGTLSGGERKRLSLARALLTGRPWLLLDEPTEG
LDAATEALLISRLRIWLDRTGTGLILISHRPAPLTLTDRQVPVSAIAPLPGQGLPGVASA
A