Protein Info for GFF1741 in Variovorax sp. SCN45

Annotation: UPF0324 inner membrane protein YeiH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 164 to 186 (23 residues), see Phobius details amino acids 233 to 254 (22 residues), see Phobius details amino acids 266 to 282 (17 residues), see Phobius details amino acids 288 to 309 (22 residues), see Phobius details amino acids 328 to 349 (22 residues), see Phobius details PF03601: Cons_hypoth698" amino acids 19 to 327 (309 residues), 324.5 bits, see alignment E=2.7e-101 TIGR00698: conserved hypothetical protein" amino acids 19 to 345 (327 residues), 336.3 bits, see alignment E=1e-104

Best Hits

KEGG orthology group: None (inferred from 49% identity to eae:EAE_24005)

Predicted SEED Role

"Putative membrane protein YeiH" in subsystem YeiH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>GFF1741 UPF0324 inner membrane protein YeiH (Variovorax sp. SCN45)
MYSLVASLPGFSFVRTRGPGLLLAALLAAAAALMSQWGLMVQLGLSALTLAIALGMLAGN
TVFPSVADSAGAGVDFARSTLLRAGIVLYGFRISLHDIGAVGWPGLLIGAAMVALTFSVA
VYVGTRWLGLDRQTAALIGAGSAICGAAAVMATQPVVRGEEHKVSIAVATVVVFGTLSMV
LYPLVFPYLGLSEHAFGLFAGSTIHEVAQVVAVGDAIGPAAANAAVVEKMLRVMMLAPFL
MVLSFQAAAAAKGATSFKACCRQVRVPWFAVLFIVMSAVHSLDLLPQSLVAGLVQLDTLL
LATAMAAMGLRTSAASLRRAGVQPLKLGALLFVFLIVGGYFVNAAVLAIF