Protein Info for GFF1731 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 PF12793: SgrR_N" amino acids 18 to 129 (112 residues), 141 bits, see alignment E=2.1e-45 PF00496: SBP_bac_5" amino acids 175 to 324 (150 residues), 82.6 bits, see alignment E=3.2e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to seh:SeHA_C4191)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (596 amino acids)

>GFF1731 SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
LLIPVREISPFMTTRHTEQKYLKLLQHYGDKPVSVTLQELADVLFCTRRHMRNLLLQMQE
AKWLIWQSQAGRGHRARLHLRYKPEQLLSEKAEQLLESGHIDQAIQLLGKNKHQVAQLLR
SKLGYSVRADYQRLCIPYYRTMPSLCPGIPLRRSEQHLVRQIFSGLTRINEEKGEVEADL
AHHWRQIDPLRWRFYLRPAVLWHDGQELTIDAVIASLTRSAKLPLFSHLQTIQATGPLSL
EITLAHPDNRLPLLLSHIDAMILPPDHTQRADFPAHPVGTGPYEVVENNGFHLQMKAFDH
YFGLRGLLDEVEVFIWPNLTETDNLAESLSDNDTAAWLSSSLSDEDYVSGRLSQVSGKPS
DNLREMFLERGGYFLLCDSRSPHWHTAEHRRWLRETLSPYAILQHLSEAIRPFWVPGGSL
LSSWFHTIEAGPACSPFISSSPYAKLRLAYHDQHPEFPMLLDIMQEIMRQQGILLEGVEL
NYDDWANGKANVDLWLGTVNFPIPEEWNVGTWLLGSPLLRHAISGGDDALLAQWETQWHA
ETISAEQLVRETTRSGWLQPLFHHWMRLKSPDRARGIHLNNLGWFDFRSTWIEPGP