Protein Info for PS417_08780 in Pseudomonas simiae WCS417

Annotation: ion transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 185 to 202 (18 residues), see Phobius details amino acids 210 to 232 (23 residues), see Phobius details PF00520: Ion_trans" amino acids 25 to 237 (213 residues), 115.3 bits, see alignment E=2.8e-37 PF07885: Ion_trans_2" amino acids 158 to 232 (75 residues), 56.7 bits, see alignment E=1.9e-19

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU1797)

Predicted SEED Role

"Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U759 at UniProt or InterPro

Protein Sequence (274 amino acids)

>PS417_08780 ion transporter (Pseudomonas simiae WCS417)
MDSNNDWRQRLYVMVFQSDTVAGRRFDGILLLIILASLVIVMLDSIDQIHQNYADVLAYI
EWGFTLIFLIEYGLRLYCSPKPLRYAFSFYGLVDLLAIVPGILALYYSDAQYLLIIRIIR
MLRIFRVLKLSPYLKQANYLMSALRGSKQKIVVFLVSVCTLVTVFGTLMYVIEGPEHGFT
SIPKGIYWAIVTLTTVGFGDIVPKTPLGQVISSLVMITGYSIIAVPTGIFTAELASAMRG
EQLQTDCPVCKKNSHEPNAAFCSRCGSNLFHKVE