Protein Info for GFF1726 in Variovorax sp. SCN45
Annotation: Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (4139 amino acids)
>GFF1726 Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system (Variovorax sp. SCN45) MHRTRALRTSFLSTMPGRSRVLRLTPLASAIAALAIAGGLADTAHAQRAFSAAWLAQKNI AQDTAMNTGRLPNGLPASSLSNPGAQQQLSRDQLQRSLNNLNLAAQAIAAQQAAQSAARQ AALGESSGVPDGLAEGGLKVDSSSLSAGWLNAHAPVQSQSPDGRSTVTIQQTGDRAILNW ETFNVGKRTTVDFKQQADWAVLNRVNDPNARPSQVQGQIKADGTVLVANRNGIVFSGSSQ TDTRNLVAAAAKIGDAQFKARGIYSAQESGNYIPAFTEAGGKVEVQAGAQIVTRKPASVT QGGGYVLLLGQEVGNAGTITTPRGQVQMAAGDFFIVRPGQGSATNQFSTTRGNEVAPQFA ANSTAGTVTNAGLLQAPEGDITLTGRRVVQDGVAVATTTVDTRGTIHLLNAASDKLSSVT TTARALSAVLLDDGNGRTALDSQRNALIADSAVQDLARRTAAAGVFDNLSRLDDRRDQSR IEIVSGGSVLFEGSSTTLATGGQIAVSVNAGAGRSTVAEGARLDVSGAIGVQVAMSTNNV QINIQGNEQRDAPLNRDTSVLNNANVWIDRRKLTRVAAGVGGYDKERWYTPGGLLEVGGY LGLQGHGIGEWATQGGSVVFSGNELVTQAGSNINLSGGTLDVQTGFIRQSWLKGTDGRLY EVSSAPADIAYSGLYKGFEDAHKRWGDKTTGFFYNPLIGPQQRLENGYTVGRDAGRLVVS TKAATLDGDVTASVYQGPRQATRRDGGLDGYAQSHEAVALAAQLVLGNYASAFNTDAKNG PQGVFQNFTPSVARIVFGVEPSMRDEAALYVDSERLNGWGLGLLLAGGTDSVAVDAPITV APGGSIRLHAPQVRIDADLAARGGEIALGNVLSSVTGLGRRIDIALPAAEGRRAQTVVAP GATLDASGLWTNLLASAGDNAFVPYVDGGRVSVRSTGDATLSEAAAIDVSSGAALLQTGK LRGGRGGDVTLAAGYVTDANVAVDPLALLTLAGDLRAHGVSGGGTLDVRSGTAIGIGGKV LDTDGLLAAGQSATANLRLLRDYQLAAGERAPMDLSTIVMHRPAGYTSDRQMIVQVSADA PLLVHVAWHIPQNFSTGVFDTQGHLYLPGNTVPAGASIRQGFTAPAGFTIPADVFPDGFA IAPVTAHYRAGSVLDVPVTLAAGSSLAAGAVLARPAAVAATTELLPALFRSGFSRYAVIS NDGIAVAPGTRLDVEMPLLRTDGDGLRSLPTGGRLAANAPVWTPPLYQEDAVHAALAQRG GASLELDAGSRVGGPAGLASLAVGTGARIAVDPGQSITLWSNGGQVTVDGRLDAWGGSIS IASQPIAQTAYRASTTRSILLGDNAVLDAAARPYVARDAQGRAYGIAPDGGAIDIGLSDS FIVIRPGAVLDASGAYAEVDGTAGGAPGMSARPLALAGAGGSIGLHSYVGMAIDGTLSAR AGGAGAAGGALSLEMANRVYSPGLENIAPEVQTAHSITLSQQHRAGELKYGAAALGVDQV KAGGFDALSLSVHDLFVFDGDIDLALGRSLELRNGFLTVASNSPEAQVRLAAPYIRLVGG TWTGLPTYYSPGIVQVGPARAPRGDSRLGLEANLIDVQGRVQTGILGYRGDGPVLPNEAS AGSRLDADGFATVALKSAGDVRLSDAVLLVPGDLSIEAAQLYPASGRRGMILAGQVANQA GVVGWDPDASLVIRSNGRAAPMPDSVFGQLVLISPTLDQGGVLRAPLGSISLNDTGGVLN NQIWLGGNGGLIAGNANMRLTLRDGSLTSVSAAGLTTPYGGTADGLTYRGADGTLYSLAS NAVSRVYRNETVSDDFVLAQGITLGGGSVAAEAGSVLDLSGGGDLRGAGFVSGRGGSVDV LTTALANANPAAYPKSGASNAVYAIVPGYASAYAPLIADKGAGDPTVGRQVVIGAGVPGL PPGTYTLLPASFALMPGAWRVEVGARMGALSGSAAPVGALADGNGSWTTTGTLALAGTGI HDSLPSQLLVTPGQAVRRFSQYNETSYADFAKAQAAQFGNVRPLLPVDGKTLRFNFVQND KLTPLRFDGQALLEGAPGGVRGQVTVLGDKPIDIVAGAADQPTAGVISVSADTLSALRAS TLSIGGIYSYFDGQSSGGDSARVYFSSGSALGRAVNVRDGATLRAGQIFLVGGQIEVDGG AVLDTRGMGRPGVDSGLGYLFANAIGESAASYSPGVLAVSNGWLELLPSVGSGRLTVKDG ASLLTEGTIGFAAPGGLALGDVNLGARYLAVSQDQINIGTAASLAAAQAAGAMQPGWQLT QTTLDRLLRPSPSAGVPALERLSLTAGGAFNFYGSVTLDTGASPVQMVFNTPAFYGLGEN SDTVRIVTRDFVWNGVATGNGNADRPYASMPATPVQPGGPGTGSGSLVIDAQRVQFGYDA LSQPQRQAELERLALGFGSVRIGATDRVTANNKGLLSVGQSRDADGMLHGGTLSIVTPLL TGQAGSAMRYAAGGAIDVSAPGGAAAVDTASIGELGASLTLQGRSVSLDTRVALPSGVLK LMADGDIVLGDGAQLDLSGRDATFYDITRHSWGGSVTLASTSGSVAQSAGSRIDVSAAHE NAGSLAVRAEAGRVTLAGALRAAGGGAGFSDGRFELAVRQIGDADFAALNQQLNGAGFFG ARGFVVKQGDLAVGAGVRAHQVSIATDAGSLTVDGAIDASGIGPGRIDLSAGGDLRLTGR AVLDAHATALITDSYGVPVEGSNRARVSLASVGGMVRLDTGATMDLSSPDGIARGRLDIS APRLGSTRGSATGPDAPANATGGDVAISAAGGLRIKGAQSIALNAMARYANAPADPDDAN GQTVDQAWLDLIDQDSRAFDTAARNNADLRARIAGLSAYGNAFHLRPGVEIDSRTPDGNL TVKGDLDLSGYRYGADAERDPASARYGAGEPIALTLRAGGDLVLHGSINDGFAPPPATPD DSGWQTRVNVLQTDKPAPKDITVEVPFNPTWGDYWYIFPGMLTGTGLPVVVSGSITDAYG TYGPGDTIYNGFLAGTITVTAGTVLTSTMPGGADILLSGPRPEPGRMWAASPMLAAGSLS ASIRMVSGADLGAADTRRVQAAAQLAGHGNLVLDDLHMATVSAPAPVQAPSVVRTGTGDL ELYAGGSYRQESLFGVYTAGTASAGTGAGSVYDAPRARLPDGTVLGAGNAEYERTLDARR MWLTTGGGDFTLAAQGDIVGYLQPETLSSGDWLWRQGGAELGQRTAWGLNFGSYVLDGWP NTAKIGFAGFAGAGALGGGNATVRAGGNIGLAGAPLRGLLAVVGASGRVLDDGTLAPAGG GTLDVTADGQVRAGMFANLRGDTHVAAADVGSLVLKNFATPNTGDPRAVDPHTAYNVMPV DVVSFAPGDGTLRIRTLGDLAVGAVVDAGRVGVRSETQASGNGATGPAATWFTLWTDRTM LDLFSAGGNVSPFNAPNIDSATYLWDVNSGTEFMPGTVSAVAAGGGIYYAVTDRVGLMMP VPGGHLDLLARGLVSGDVRNAVSGGHAPVGPLGAPASTMATPLRPGWRIAGNSANSQLIA SNYWNFSGLGVTDWGQVYNYNYGENPPSHSGTGGNLFMFGPNTVSDHSMGSDGAVSHIYA VSGDVMGVEFGSLANLSLGPGLAPIPFYQSARPLRLLAGGDIVNARGLIVQDAATDVSML AAGGDILFANFSVAGPGTLEVSAGGQIFQGSKSSLTSIGAVASGDTRPGAGIVVQAGLGA GAPGQGASDFAGFAARYLDPANRFDASGTLAGQPDKVVKTYEAELAQWLRERFGHLVASP AEALAFFRTLAPEQQRIFVRQVFYAELTAGGREYNDASSARSGSYLRGREAIAALFPAQD AAGTPIARSGGITLYQGTDNNAGIRTVAGGGIQLLAPGGTSILGVEGVAPVAGMSMNPAG LLTQGEGSIQMYSRGSILLGLSRIMTTFGGDILAWSAQGDINAGRGSKTTLVYTPPKREY DLLGNVKLSPNVPSTGAGIATLAPIAQVPPGDVDLIAPLGTIDAGEAGIRVSGNVNIAAL QVVNAANIQVKGQSTGLPVVAAVNVGALTNASAAASQAAIAAQDTVQRERTAQRQALPSV FTVRVLGFGNERTDGEPGRVSGEPVSYRQDSPVQVVGDGPLTEAQKARLTPGERRAFGL