Protein Info for PS417_08725 in Pseudomonas simiae WCS417

Annotation: cytochrome C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 104 to 125 (22 residues), see Phobius details PF03918: CcmH" amino acids 10 to 151 (142 residues), 182.2 bits, see alignment E=1.6e-58

Best Hits

Swiss-Prot: 90% identical to CCMH_PSEFL: Cytochrome c-type biogenesis protein CcmH (ccmH) from Pseudomonas fluorescens

KEGG orthology group: K02200, cytochrome c-type biogenesis protein CcmH (inferred from 99% identity to pfs:PFLU1765)

Predicted SEED Role

"Cytochrome c heme lyase subunit CcmL" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1TF36 at UniProt or InterPro

Protein Sequence (157 amino acids)

>PS417_08725 cytochrome C (Pseudomonas simiae WCS417)
MKRLLAAAVLALGLVGVAHAAIDTYEFAKDGDRERFRELTKELRCPKCQNQDIADSNAPI
AADLRKEIFRMLGEGKDNQQIIDFMVDRYGDFVRYKPALTGKTALLWFGPAGLLLTGVVV
MAVIVRRRRAAPTDGSDALSPEERKRLDQLLDTKTDD