Protein Info for GFF1706 in Variovorax sp. SCN45

Annotation: ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) / ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 580 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 103 to 126 (24 residues), see Phobius details amino acids 131 to 155 (25 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 240 to 260 (21 residues), see Phobius details amino acids 284 to 299 (16 residues), see Phobius details amino acids 331 to 349 (19 residues), see Phobius details amino acids 351 to 376 (26 residues), see Phobius details amino acids 379 to 401 (23 residues), see Phobius details amino acids 413 to 436 (24 residues), see Phobius details amino acids 444 to 467 (24 residues), see Phobius details amino acids 488 to 510 (23 residues), see Phobius details amino acids 545 to 566 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 84 to 256 (173 residues), 53.3 bits, see alignment E=1.5e-18 amino acids 394 to 567 (174 residues), 73.6 bits, see alignment E=9e-25

Best Hits

Predicted SEED Role

"ABC-type anion transport system, duplicated permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (580 amino acids)

>GFF1706 ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) / ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) (Variovorax sp. SCN45)
MKSTAPQLAIVEERRTLGWIDALFLLVLLGLLWSALHFGKGMIVHFDPAAVPEIDSSPSQ
IPYYAGRTLMRMWIAFGFSLFFAVATGYLAAKSRTARAFILPALDVLQSVPVLGFLSATV
AAFMALFPGSLLGVECAAIFAIFTGQVWNMAFGFYHSMVTIPNDMQEAASTYGLTRAQRF
RTVELPASAHSLIWNSMMSFGGGWFFVAQSEAISVMNKDIKLPGLGSYMAQAIAQGDNTA
ALWAVVAMIVLILVSDQLVWRPLLAWADKFKIELTESATPATSWVYNLLRGAYLFTWIGE
RLWLPLKDRVARVPNPAAKVPVRLTVGGQKLLWRAAGIVLAVWIGFEILKALAAAVAALH
GALTLAGFGHIVWLGVLTALRVATMTVLATLIWVPVGVWIGSQPRVARFAQPLAQIGASF
PVNMTFPIVVGFFVATHVTLNWGSILLIAMGTQWYILFNVIAGAMAIPNDLKEAARVYGL
RDWNLWRTLILPAIFPYWVTGACTAAGGAWNASIVAELATWGSTTLKADGLGAYIATVTR
EGDTALIIASIGVMSIFVVLMNKLIWRRLYAFAERRFKLD