Protein Info for GFF17 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 transmembrane" amino acids 49 to 68 (20 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 100 to 121 (22 residues), see Phobius details amino acids 127 to 145 (19 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 245 to 262 (18 residues), see Phobius details amino acids 268 to 285 (18 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 318 to 339 (22 residues), see Phobius details amino acids 348 to 365 (18 residues), see Phobius details PF13515: FUSC_2" amino acids 231 to 357 (127 residues), 90.3 bits, see alignment E=5.7e-30

Best Hits

KEGG orthology group: None (inferred from 63% identity to oan:Oant_4168)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (386 amino acids)

>GFF17 hypothetical protein (Xanthobacter sp. DMC5)
MSLSEPPHAASADSAALAARRLDAARHLLKPHQIRESWALAAQPWQRNAALAGLQASLAA
AIALPLALLSPWPHLVGFASLGTLAALFGRFAPQAGRGRIVLVCAMWLTVSVLVMSTATW
LGAPYPLQLALLALACGLFFFVANTGQYGPPGALIFVFAAGAAMGHVASWQEVVERAIAT
ALAAGLTWLICVETEAFRQQETPEAPFPVEPVRPLDHRLIAAARITLGSAIAAFAAYAAG
AAHPAWAAMGTVAVMQGTHLHISMSRAMQRMSGTVVGAGVVWLILSQEPSVWSVVALLIF
LQFATEMIIGANYALGQILVTPMALLMSYLAAPGAAGTAMAPERVFDTLVGAIIGIVLAV
VCSTLDDRLYLARHHAARADRGSAGR