Protein Info for GFF1666 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 transmembrane" amino acids 65 to 83 (19 residues), see Phobius details PF13379: NMT1_2" amino acids 95 to 334 (240 residues), 260.2 bits, see alignment E=2.7e-81 PF09084: NMT1" amino acids 113 to 321 (209 residues), 27.3 bits, see alignment E=3.3e-10

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 93% identity to xau:Xaut_2617)

Predicted SEED Role

"Cyanate ABC transporter, substrate binding protein" in subsystem Cyanate hydrolysis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (454 amino acids)

>GFF1666 hypothetical protein (Xanthobacter sp. DMC5)
MSMFSNPFSLKSTLRRCLCGRHASAEEHAAAERAATLSDEARYKEVVASGLMRALFPNDL
KRRAFLKAVGTSTAAAALATFFPLDAATEAFAQTGKPEKTDLKVGFIPITCATPIIMAHP
MGFYTKHGLNVEVVKTAGWAVVRDKTINKEYDAAHMLAPMPLAISQGLGSNPIPFVAAAI
ENINGQSFTLGIKHKDKMDVKSWKGLKFAIPYDFSMHNYLLRYLLAENGLDPDTDVQLRV
VPPPEMVANLRAENIDGFLAPDNVAQRAVFDGVGFIHSLSKTMWDGHPCCSFAASREFIS
TMPNTYAALLRAIVDATGYASKAENRKAIAEAIAPAAYLNAPPIVLEQVLVGKYADGLGN
IKDDPKRVDFDPFPWDSFAVWMLTQMKRWGQIKGEVDYTKVANEVFLATDAAKVMKEMGL
TPPATTMKSFSVMGKVFDPAKPAEYVSSFAIKRS