Protein Info for PS417_08480 in Pseudomonas simiae WCS417

Annotation: elongation factor P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF08207: EFP_N" amino acids 4 to 60 (57 residues), 73.1 bits, see alignment E=2.2e-24 PF01132: EFP" amino acids 68 to 122 (55 residues), 44 bits, see alignment E=2.6e-15 PF09285: Elong-fact-P_C" amino acids 132 to 187 (56 residues), 58.9 bits, see alignment E=5e-20

Best Hits

Swiss-Prot: 100% identical to EFP_PSEFS: Elongation factor P (efp) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K02356, elongation factor P (inferred from 100% identity to pfs:PFLU1714)

Predicted SEED Role

"Translation elongation factor P" in subsystem Translation elongation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U707 at UniProt or InterPro

Protein Sequence (190 amino acids)

>PS417_08480 elongation factor P (Pseudomonas simiae WCS417)
MKTGKELKPGTVIRLENDPWLVQKAEFTKSGRNSAIMKTKLKNLLTGYKTEIVYSADDKL
DDVILDRKEATLSFISGDTYTFMDTTDYTMYELNAEDIEAVLPFIEEGMEDVCEAIFFEE
RLVSVELPTTIVRKVAYTEGSARGDTSGKVMKPAKLSNGTELQVADFIEIDDLIEIDTRE
GGSYKGRAKK