Protein Info for GFF1663 in Sphingobium sp. HT1-2

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 209 to 232 (24 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 299 to 319 (21 residues), see Phobius details amino acids 334 to 359 (26 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 270 (254 residues), 132.9 bits, see alignment E=1.3e-42 amino acids 215 to 381 (167 residues), 45.8 bits, see alignment E=4.1e-16 PF06779: MFS_4" amino acids 22 to 371 (350 residues), 26.3 bits, see alignment E=4.7e-10

Best Hits

Swiss-Prot: 41% identical to YDHP_ECOLI: Inner membrane transport protein YdhP (ydhP) from Escherichia coli (strain K12)

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 76% identity to sjp:SJA_C1-21640)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>GFF1663 Uncharacterized MFS-type transporter (Sphingobium sp. HT1-2)
MGSQAHKAHPALVLFALSVGAFAIGTTEFASMSLLPFFARDLHIDLPTAGHAISAYALGV
VVGAPLIAAFAARLPRRTLLIALMAMFAVGNGLSALSPSYHWMLLFRFLSGLPHGAYFGV
AALVAASLVPIEKRTLAIAKVMSGLTIATVLGVPVANWMGQILGWRSGFFVVCALAVLTM
SLVALYAPRDAGDPKASPMRELSALGKSQVWLTLLTGAIGFGGLFAVYTYVASTMIEVTH
VSETLVPLILIVFGLGMTIGNLVVAWLADRALNRTVIGILVWSAVALALFPFMAGNIWSL
SLIVFLIGIGGGMGTPLQARLMDVAGDAQTLAAALHHSAFNIANALGPWLGGLSIAAGYG
LVSTGWIGCALSLGGLAIYLVAIATARRSAQPALVPCE