Protein Info for PS417_08375 in Pseudomonas simiae WCS417

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 transmembrane" amino acids 17 to 39 (23 residues), see Phobius details amino acids 59 to 75 (17 residues), see Phobius details amino acids 96 to 124 (29 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details amino acids 218 to 238 (21 residues), see Phobius details

Best Hits

KEGG orthology group: K01992, ABC-2 type transport system permease protein (inferred from 81% identity to pfs:PFLU1693)

Predicted SEED Role

"gliding motility protein GldF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UF35 at UniProt or InterPro

Protein Sequence (241 amino acids)

>PS417_08375 ABC transporter permease (Pseudomonas simiae WCS417)
MKLLPIILRRQLASYACTPSTYLHIAVFLILSVTLGRYVSPWPEQNSSDLQVFFQFHPWL
YLLLTPALATQLWADESSAGFLGLMKTMPITTYEWVIGKFLAAWLVAGTALLLMFPLVII
ANYLGKPDNSVIASQWVVSWLLAGSYLSVGCFICAFVRQRTVVFGLTLGLLLTASGLSAI
LDALEHQAPIGLIDSLAALSPTLRFSNIDDGKLTLRDTLYFISMILAFLTATTVTLNYKH
S