Protein Info for GFF1641 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1112 PF22527: DEXQc_Suv3" amino acids 17 to 155 (139 residues), 80.1 bits, see alignment E=1.3e-26 PF00271: Helicase_C" amino acids 185 to 282 (98 residues), 42.3 bits, see alignment E=8.3e-15

Best Hits

KEGG orthology group: None (inferred from 75% identity to azc:AZC_0230)

Predicted SEED Role

"ATP-DEPENDENT DNA HELICASE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1112 amino acids)

>GFF1641 hypothetical protein (Xanthobacter sp. DMC5)
MDDVTRWAVLPRNLRARGVSAVLGPTNTGKTHLAIERMLGHESGIIGLPLRLLAREVYQR
IVDRVGAENVALITGEEKIKPKGRHGAGPRYWVSTVEAMPRDLDVAFVAIDEIQLATDLD
RGHVFTDRILNRRGRYETLLLGSATMRPLVEKLIPGVNVVVRPRLSTLTFAGERKISRLP
RRSAIVAFSADEVYSIAEFIRRQRGGAAVVMGALSPRTRNAQVELYQSGDVDYLVATDAI
GMGLNLDVDHVAFASDRKFDGWQYRKLNPSEMAQIAGRAGRATRDGTFGTTGRCPPFEEE
LVSRLEEHVFDTAKVLQWRNAVADFQSPAALLTSLSRLPKEEGLTRAPTADDVAVLEIMS
RDMEVTGRLDGAADVERLWDACQVPDYRKVSPGAHAELVGTLFGHIKGGGRIPDDWFARQ
IALTDRAEGDIDTLSNRIAQVRTLTFVANRPDWLRDPEHWQGVTRGVEDKLSDALHERLA
QRFVDRRTSVLMRRLRENTMLETEISKTGDVTVEGHVIGHLHGFQFAPDPAAAAGGEEAK
ALRAAAQQALAGEIEQRAQRLSQAVDEAFVLTFDGTIRWTGEAVAKLIPGDEVLKPRFKI
IADEHLTGPARDQVEARLTLWVAAHIEKLLGPLMKLGTAEDITGIARGIAFQIVESLGVL
ERARVADEVKGLDQAARATLRGHGVRFGAHHIYLPALLKPAPRALAAELYALKHGGLAQK
GLDELPHLAASGRTSIPVDHEVQKGLYRAVGFRVCGERAVRVDILERLADLIRPALAWRP
NSPGPKPAGAVDGRGFTVTVGMTSLAGCSGEDFASILKSLGYRMERRLPPPPEAEAPAAA
PEAAPAELAPLPEGAIEADLLFDAPAEAPAAEPVGEDADAPAESVDEAPADETAADEAPA
DVVAADVILADAAEAEAAAEAVEVSGDPTAAEVAAEVETAAAPGGPEAIEGAVEVVAEAA
AADAAPAEPEMIEVWRPGRPPGAPRRERPAGEGRRFGDRPGGERGERGGEKGGGRGERRD
GRPPHRRPEHAPAEAGAPEGERAPRPPRGDRPFRGPRENEGNREHRGPRPEQRADNRPAH
QERRREKPADPDSPFAALAALKARMEAEKKGG