Protein Info for PS417_08345 in Pseudomonas simiae WCS417

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 140 to 166 (27 residues), see Phobius details PF00672: HAMP" amino acids 160 to 208 (49 residues), 35.8 bits, see alignment 8.3e-13 PF00015: MCPsignal" amino acids 277 to 460 (184 residues), 145.4 bits, see alignment E=1.6e-46

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfs:PFLU1687)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZI7 at UniProt or InterPro

Protein Sequence (493 amino acids)

>PS417_08345 chemotaxis protein (Pseudomonas simiae WCS417)
MGAWLSNISLKYKFWAVNAVAFITTLLLVLYAVQLEQQARSTASHASAQAQARLLDAWPA
GETLPKGEHWLTFKRGQIPQLADQDLSALGSATGWVEFNPMPVFGDNPLLGAEVVARPDG
QYIAVLAYAPSLSQVFEERFANYAVAVLILMLAMLGASQLLIRFLLSQLNTLKDVMLHVE
KTGDLSARVPLACKDEVGQMASAFNAMQAGYQRVVNTVAHTARQLDDGAARLASSMNEVQ
HGMLGQQSETDQAATAINEMTATVHHIAQHAGATRDLSQTADTLAGSGQEVVTRVQRSIA
GLSTGVQQTAVMIQKLAEDSQKINGVVSVIHSIAEQTNLLALNAAIEAARAGEMGRGFAV
VADEVRNLAKRVQSSTDEITRMVSALQAGTRDAVDFMQESSFKADDCVHQAQEAGAALAE
ITGAVAQMRESNTQIAVAAEQQSHVAEEMNRAVVSIRDVTENTVQQTVDSATTSNQLATL
AGELSKAIGQLKL