Protein Info for PS417_08340 in Pseudomonas simiae WCS417

Annotation: type IV secretion protein Rhs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1572 transmembrane" amino acids 257 to 280 (24 residues), see Phobius details amino acids 292 to 306 (15 residues), see Phobius details PF20148: DUF6531" amino acids 426 to 498 (73 residues), 71.4 bits, see alignment 1e-23 TIGR01643: YD repeat (two copies)" amino acids 721 to 750 (30 residues), 16.7 bits, see alignment (E = 8.1e-07) amino acids 783 to 812 (30 residues), 23.8 bits, see alignment (E = 4.8e-09) amino acids 824 to 864 (41 residues), 21.6 bits, see alignment (E = 2.3e-08) amino acids 866 to 907 (42 residues), 31 bits, see alignment (E = 2.5e-11) amino acids 1019 to 1049 (31 residues), 22.1 bits, see alignment (E = 1.6e-08) amino acids 1242 to 1274 (33 residues), 26.4 bits, see alignment (E = 7.2e-10) PF05593: RHS_repeat" amino acids 785 to 815 (31 residues), 23.1 bits, see alignment (E = 1.2e-08) amino acids 845 to 882 (38 residues), 30.7 bits, see alignment (E = 5e-11) amino acids 887 to 924 (38 residues), 24.2 bits, see alignment (E = 5.3e-09) amino acids 973 to 1013 (41 residues), 22.2 bits, see alignment (E = 2.2e-08) amino acids 999 to 1028 (30 residues), 28.1 bits, see alignment (E = 3.3e-10) amino acids 1219 to 1258 (40 residues), 22.2 bits, see alignment (E = 2.3e-08) amino acids 1242 to 1273 (32 residues), 24.8 bits, see alignment (E = 3.5e-09) PF03527: RHS" amino acids 1324 to 1358 (35 residues), 56.5 bits, see alignment (E = 2.9e-19) TIGR03696: RHS repeat-associated core domain" amino acids 1350 to 1426 (77 residues), 95.9 bits, see alignment 1.6e-31

Best Hits

KEGG orthology group: None (inferred from 86% identity to pfs:PFLU1686)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3Z9 at UniProt or InterPro

Protein Sequence (1572 amino acids)

>PS417_08340 type IV secretion protein Rhs (Pseudomonas simiae WCS417)
MIPVIAQFVLYPMDAETPDVETVFRDFRSCLNSFDEWAESFWSGSALNVEQVFRVGEDVA
LVAPASSKKPNRTVAVCKAQGSLTLVHMFESTRFVPIGNTPVMLQAIGSDGKPFGAPIRR
TIDASGILEVNECIRDQRYQVTFYPNVSKAHVKALYASYQSVIAGLEHRLRDEWTKTFKP
RWKDFASATPFERSAMQGVAFAGGIGKALYNLWDNVTQLYDLLADLKANSEKLLQYITQA
ELDELLKLGKDAIAHGLLVLSDEPLLFIYLSAMVAWIRMLAPPEMYELAGEITGEVLINL
FLIWATRGMGVHVRLGMQVLGPIKSGRVRRWLERLADQLVGPRLDAHVEAAKPLLLGSAA
TPIRVIPDVPLKAGDQVIANPVPVVRDKATQRTVLVRQETVDDVPASARNPAGNVAASSD
KTATNGCPVSMVTGEELLTLTDGTLDGLLPFEWSRLYRTSAVETDCGLGFGWSHSLAHRL
SVSGDAVVWTDHENRSTTLPLPTASRPAITNSLAEAAIYLGAVPDELVLSQGSRFYHFRD
GALTAISDAYDNRLRICRDFLGRIERLDNGVGRSLFLRYASSRIVAVDYQIERAVDDGPF
VWVTEQTVVAYAYDDSGRLISATNAVGESEVYRYDDQHVILERGLAGGASFFWAWERAGK
AARCVRHWASFSQMDTRYAWDDNGQVTVFNAAGSQEVYVHDLRARLGQRVDPDGAQHFKS
YDDPGRLTVEQAPLGAITAYPYDEAGRLVALFPGDDAPTTYEHDNGFVRVVRRGQAVWKY
ERNNQGDVTRKTDPDGNATDYSYNKYGQLVGVWYPDHSCHRLTWNERGQLLEEQLPNGVI
KRYCYDDLGRQVAREDAQGALTQYQWDSVGRLIRVVLPGGATREYSYNAYGKITSERNEL
GHVTRYEYADGLHLISRRINADGTQVKYRYDNVRLLLTEIENEVGETYRLQYHSNGLTQQ
EIGFDGQRSAYAYDLNGNLQEKTEHGDDGSQLVTRYERDHAGRLVRKTLPDGSLVDYAYD
RQGNLLSVENGHWALAYEYDSQNRLTAEHQGWGTLRYGYDACDNLQTLRLPDNNRVTFNH
AKGGLLEKVEVNGQTLTAHLFDTGREHQRGQGKLLSSYQYDAQGRLFNHGLCNVEGAIYQ
RQYHYDTCGNLTRRLDTRKGEHHYHYDALSRLIRADHSQGEQERFAHDPAGNLLMQNRPG
PDIVAGNRLMIQGDHHYDYDAFGNLIRERRGKGHTLVTEYRYDCQHRLIGIKKPNGQTAS
YRYDPFGRRISKTVDGITTEFFWQGDTLIAEHHANRHRSYLYEPDTFRPLALLEGFGPKE
TKAYHYQLDHLGTPQELTNPDGEIVWSAHYRAYGEITRVDIGKVDNPLRFQGQYFDQESG
LHYNRHRYYNPDIGRYLTPDPVKLAGGINTYQYVPNPTGWIDPLGLSNCPEGGRCKSQAR
TEEPIDKIRVTRAEPNSPAVSKRPTEFASEQKLNEHYDKHGTEFRVESSHEYLLAARHVV
SKGTPVQYVYRGTPTISYVLLMGTNRTGQAKFAFAGSNTNGHITTLHTKSGKDFWRMING
DATDKTIRPYSK