Protein Info for GFF162 in Sphingobium sp. HT1-2

Annotation: putative secreted protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF13372: Alginate_exp" amino acids 92 to 485 (394 residues), 124 bits, see alignment E=3.5e-40

Best Hits

KEGG orthology group: None (inferred from 44% identity to xca:xccb100_2946)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (493 amino acids)

>GFF162 putative secreted protein (Sphingobium sp. HT1-2)
MVRFSCAAARRPIAVSALTLATLFARPAWADDMPAEPASLYPADAVGEGSVSGGYALSRW
AEDWRRKADPAQRDDPFDRLKYLPLDDDGDIYLTLSGEARVRVNYTTNLNLRNAGSQRQD
INRLVGGADLHVGPHLRFYGEIAHGGMSGDNIGTPSGSLRNDLVLLQSFAELKGRVAGMD
LGLRYGRQEFTDGPNLLTSQRDNNTIRYALNGVRAWARTGSLRIDAFDFKPTALGNGGID
DDKVEQGRRFSGFTAGIRIPEKALGGSELYLDPFFWRLRTSEALWGGITGRVERFYAGAR
LWGEVGPVNLDWTVNHQFGDFDGRDISAWQLFFNQSYKLPGDLPMGPRIGFHADYASGGG
TFEGGTLKAAYAPFGNNIYYSYQLCMTPTNLKTLAPSLTLSPLKGVKMLMEYQFAWRADE
NDAVYRANKSIFAGTQLVSGHKIGESIRAQINWSITPRLSFVGRYEHLDAGPVLSRAGYG
NSDYLAGWLSFRF