Protein Info for PS417_08220 in Pseudomonas simiae WCS417

Annotation: epimerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 PF01370: Epimerase" amino acids 3 to 231 (229 residues), 54.7 bits, see alignment E=5.1e-19

Best Hits

KEGG orthology group: None (inferred from 51% identity to pfl:PFL_5098)

Predicted SEED Role

"putative dTDP-glucose 4,6-dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U6W1 at UniProt or InterPro

Protein Sequence (310 amino acids)

>PS417_08220 epimerase (Pseudomonas simiae WCS417)
MHIAIFGANSQIAQDLTRSLAAARTFDLSLFVRDKNKLDTSALIPTGQRSIKIFEYADFD
RNTAFDAIINFVGVGDPAVASKMGSAIFDITYEYDKLALDYLKANNKCRYIFLSSGAAYG
GDFETPAQAQTLATFDINNLKTTDWYAVAKFYAETRHRALQGLSIVDIRVFNYFSHTQDL
SARYFMTDAVRAIKDNTVLTTSPANMFRDYITPLDFYTLISKALAFNGDLNIAVDCYTKA
PADKFSILDHLQSNFGLQYTTEKATQHINATGAKQHYYSENRMASTLGYTPHFNSIEGLT
HEIERCQFIK