Protein Info for GFF1614 in Variovorax sp. SCN45

Annotation: Phosphonate ABC transporter ATP-binding protein PhnC (TC 3.A.1.9.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 TIGR02315: phosphonate ABC transporter, ATP-binding protein" amino acids 1 to 239 (239 residues), 309.9 bits, see alignment E=5.6e-97 PF00005: ABC_tran" amino acids 17 to 171 (155 residues), 108.8 bits, see alignment E=1.7e-35

Best Hits

Swiss-Prot: 48% identical to PHNC2_OCEIH: Phosphonates import ATP-binding protein PhnC 2 (phnC2) from Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831)

KEGG orthology group: None (inferred from 66% identity to rcu:RCOM_1944660)

Predicted SEED Role

"Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)" in subsystem ABC transporter alkylphosphonate (TC 3.A.1.9.1) (TC 3.A.1.9.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>GFF1614 Phosphonate ABC transporter ATP-binding protein PhnC (TC 3.A.1.9.1) (Variovorax sp. SCN45)
VIRIRQLTKRYGDNAVLRGVDLDAAPGEFVVVLGESGAGKSTLLRCVNRLAVADGGELEV
GGMDAVRCMDTRALRQRVAMIFQHHNVVPRLSALKNVLTGRLGAVSTLASVMHFFSRADI
ELAHECLGRVGLAHKAHERTDSLSGGQMQRVGIARALAQQPRLILADEPVASLDPQTSRK
VLQYLHDASRDLGITVLCNLHQVDYAREFADRIVGLSQGRVVFDGAPQAMGQDDIDRIYM
PQPAFQMKGAAGPIAPSMPLMAGTGK