Protein Info for GFF1606 in Variovorax sp. SCN45

Annotation: Cys-tRNA(Pro) deacylase YbaK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 PF07905: PucR" amino acids 15 to 124 (110 residues), 99.1 bits, see alignment E=4.2e-32 PF17853: GGDEF_2" amino acids 302 to 408 (107 residues), 39 bits, see alignment E=1.7e-13 PF13556: HTH_30" amino acids 464 to 521 (58 residues), 55.5 bits, see alignment 7.9e-19 PF02954: HTH_8" amino acids 470 to 498 (29 residues), 24.6 bits, see alignment (E = 3.3e-09)

Best Hits

Predicted SEED Role

"Cys-tRNA(Pro) deacylase YbaK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (528 amino acids)

>GFF1606 Cys-tRNA(Pro) deacylase YbaK (Variovorax sp. SCN45)
MQLDEAFRTSPLQVGTVVAASAHLARDISWVQVVDHPDIEEWVEPGHLLLSTGYNWPKGD
KDAAVLIGKLAAKGACGVVLAVPNFVEHFAAETIAAANRAHLPLIELPWEVPFSSITQYV
HRELVDRQSRALAKSAQIHRQLTEAAATGDSLQDVARVLGQVLERSVQIHATEGGLLAGH
IVEQGGHASPAFEPGIFQALSAGGGIKAMDAQTRAIRWHPRPSRLATTAQSVVGCAVRNR
NGGLGYVLVAEGVPPLSEIDLRAVEQASIVAALQIAHQRELSAHEARLGYALVAALLEGR
FDETPSVIERARLLGWDPEQSYRLATILLDEPNPLSSEGLGRREQLAGQVARALRQKGAQ
PLISLSANQIHALVPHEVDIEWLWSSISHGHCAMGVSEVHQGVAGMHSAGLEMADLMPHT
KPGRVHFFDEAMFPRVLAGDAAARRVFIQRLFGALEADRRGQALIDTAIALTDEGFNLQR
AADRLDVHISTLRYRLGRLSELTKLDLDCVEGRFRLQFGVRLYLAEQA