Protein Info for GFF1566 in Xanthobacter sp. DMC5

Annotation: Beta-barrel assembly-enhancing protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 781 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13435: Cytochrome_C554" amino acids 60 to 86 (27 residues), 17.3 bits, see alignment (E = 4.5e-06) amino acids 195 to 233 (39 residues), 20 bits, see alignment 6.8e-07 PF09699: Paired_CXXCH_1" amino acids 352 to 377 (26 residues), 25.2 bits, see alignment (E = 6.3e-09) PF13432: TPR_16" amino acids 573 to 635 (63 residues), 17.7 bits, see alignment 2.5e-06 amino acids 674 to 737 (64 residues), 22.3 bits, see alignment E=8.7e-08 PF14559: TPR_19" amino acids 611 to 669 (59 residues), 29.7 bits, see alignment 4.1e-10 amino acids 679 to 742 (64 residues), 27.4 bits, see alignment E=2e-09 PF13181: TPR_8" amino acids 639 to 667 (29 residues), 13.6 bits, see alignment (E = 3.8e-05)

Best Hits

KEGG orthology group: None (inferred from 88% identity to xau:Xaut_3410)

Predicted SEED Role

"probable deca-heme c-type cytochrome"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (781 amino acids)

>GFF1566 Beta-barrel assembly-enhancing protease (Xanthobacter sp. DMC5)
MSFRRLVGVCASALATGILTAGLLAMASAVSAPREPAALAPGSIGALSAGAPPGFVGSAA
CADCHAAETRAWLSSQHAHAMSRAAPQTVLGNFDDARVTHPGSSALFFRDGSRFMVETEG
ADGKTDAFEITDTFGVHPLQQYLVTFPDGRRQALPFAYDTRTAAEGGQRWFHLYPDQMIA
PSDVLHWTGMQQNWNFMCAECHSTGLRKNYDPAANRFDTRFSEISVGCEACHGPARGHVD
WAKGPRDREVPNKGFATVAALRPPADWTIDPATGSPAHGVSRPAGDVVETCARCHARRSI
LSEDWRPGQPLTQTHLPTFLSEGLFEADGTMQDEVFNDHPFKQSLMYARGVTCGDCHEPH
SSALRAPGSAVCAQCHLPEKFASEAHTGHALGPKAPDCISCHMPARTYMVVDTRHDHSFR
IPRPDLSARLGTPNACNDCHKDKAAGWAAGAVARWHGPERKGFQTWAEAFHDARGGDPAA
REALIRLATTPATPAIVRATAVNELRGFPSIATDAVLQKALADPDPLVRIAAIENAAGLP
LDTRWRRLAPLLTDPVAGVRMEAANQLADQPLAALSAADRDRLGTAFGEYEAAQRLNADR
PEARSNLGGFLLRRGDVAGAEAQFRAGLKLQPDLPALAVNLADLYRVTGREREAQAVLDR
AIKANPDAAAPRHALGLGLIRQKRYGEALNELKRAYELAPGNARYAYVYAVALQSLGRAQ
DSAVVIREALSRTPNDADLLALALNEAMRSGDVDRARDVVSRLALLRPDDAEIAGLQMRL
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