Protein Info for GFF1559 in Variovorax sp. SCN45

Annotation: Mg(2+)-transport-ATPase-associated protein MgtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 41 to 61 (21 residues), see Phobius details amino acids 76 to 94 (19 residues), see Phobius details amino acids 101 to 118 (18 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details PF02308: MgtC" amino acids 16 to 145 (130 residues), 136.1 bits, see alignment E=4e-44

Best Hits

KEGG orthology group: K07507, putative Mg2+ transporter-C (MgtC) family protein (inferred from 62% identity to oca:OCAR_6541)

Predicted SEED Role

"Mg(2+) transport ATPase protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (239 amino acids)

>GFF1559 Mg(2+)-transport-ATPase-associated protein MgtC (Variovorax sp. SCN45)
MQTSVLLPHGETLLRLLVAAALGSLVGLERERLLWAAGIRTHMLVSVGACLFMLVSAYGF
ADSLRGEHVVLDPSRAAAQVVSGIGFLGAGAILARGEIVRGLTTAASIWTVAAIGLAVGG
GLYFPAAASTVIILVILAGIKPLEEAYRARSQSCRLGVVADHGAVSPETLERGLGIQPAR
LRRFLVAVQPGGRLDDITVQLVRVSSADIESFVQRLQQQPGVRSVEVMTRGGGHGTEVN