Protein Info for GFF1556 in Xanthobacter sp. DMC5

Annotation: Oligosaccharides import ATP-binding protein MsmX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 121.3 bits, see alignment E=9.5e-39 PF17912: OB_MalK" amino acids 235 to 281 (47 residues), 45.3 bits, see alignment 2.7e-15 PF17850: CysA_C_terminal" amino acids 240 to 283 (44 residues), 35.5 bits, see alignment 2.5e-12 PF08402: TOBE_2" amino acids 274 to 343 (70 residues), 28.2 bits, see alignment E=3.3e-10

Best Hits

Swiss-Prot: 59% identical to UGPC_RHOS1: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)

KEGG orthology group: None (inferred from 61% identity to dsh:Dshi_1250)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>GFF1556 Oligosaccharides import ATP-binding protein MsmX (Xanthobacter sp. DMC5)
MAEVRLNKVRKAYGGQVAVHGVDLHIRDGEFVVFLGPSGCGKSTTLRMIAGLEEITTGTI
EIGGRDVTRLEPKDRNIAMVFQNYALYPHKTIYENLAFGLRMRRMDKAEIDRRVKSASAM
LGLDPYLERKPKQLSGGQMQRVALGRALVRDPDVFLLDEPLSNLDAKLRVRMREEIARLH
QEVGTSMVYVTHDQVEAMTLANRILIMRDGHVQQVGAPLEVYDRPANLFVAGFIGSPEMN
LIEGHLERGALKAGGLSIELPPGIAAAEGTPLVLGVRPEHIGVGEAPGAHAFHVAVIEQL
GAQTLCIGEVVGVRLRVLMDRTDAVRNGTTLPIQFRPGRLHVFSKETGARINRADADVGR
RPAA