Protein Info for PS417_07835 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 PF14534: DUF4440" amino acids 10 to 118 (109 residues), 36.9 bits, see alignment E=1.1e-12 PF13474: SnoaL_3" amino acids 10 to 118 (109 residues), 49.2 bits, see alignment E=1.6e-16 TIGR02246: conserved hypothetical protein" amino acids 11 to 120 (110 residues), 39.7 bits, see alignment E=2.2e-14 PF08332: CaMKII_AD" amino acids 11 to 120 (110 residues), 29.4 bits, see alignment E=2.1e-10 PF02136: NTF2" amino acids 19 to 58 (40 residues), 21.8 bits, see alignment E=5.5e-08

Best Hits

Swiss-Prot: 52% identical to YYBH_BACSU: Uncharacterized protein YybH (yybH) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 65% identity to mmt:Metme_0036)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UI10 at UniProt or InterPro

Protein Sequence (136 amino acids)

>PS417_07835 hypothetical protein (Pseudomonas simiae WCS417)
MDALTRTLKETIEAADRAITAEDFDELMKFYADDASLVVKPGLTVSGKESIRRAFVAIAD
HFNNSIVVTQGEIQVIQGGDVALVIMETLLQATDKAGVKTEISRRATYVFRQISEKWLCV
VDNSYGTTLLDSVVGS