Protein Info for GFF154 in Xanthobacter sp. DMC5

Annotation: sugar efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 103 to 126 (24 residues), see Phobius details amino acids 137 to 160 (24 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 218 to 238 (21 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 278 to 295 (18 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 365 to 385 (21 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 313 (293 residues), 97 bits, see alignment E=1.1e-31 PF00083: Sugar_tr" amino acids 50 to 189 (140 residues), 47.1 bits, see alignment E=1.8e-16

Best Hits

KEGG orthology group: None (inferred from 76% identity to xau:Xaut_1473)

Predicted SEED Role

"putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>GFF154 sugar efflux transporter (Xanthobacter sp. DMC5)
MPASAPSPNQLGFARIFAMAAAAGIAVANIYYNQPMLAVMEADLPGPLTPLVPTVTQLGY
AAGLFLLVPLADQMERRRLIVVHFIAVAAAAALSALAQGALALLAASLLLGLGSTVAQQI
VPFAAHLAPPEKRGATVGTVLSGILAGILLSRTLAGFVAAHAGWRAMFWLAVPMALAAAA
LMAAMLPRSKPEGTLSYGSLMASLFGLWKEFPTLRRAAITQALIFASFIAFWTILAFRLE
GPPFGLGAEAAGLFGILGLVGVLAAPLFGRFTDRRGPSSVVVLGTVLALVAWLFFSLWPQ
LAGLGVGVVLIDLGIQSALVGNQHRIFALRPAARARLNTILVGTMFLGGAFGSAVATMAW
VWGGWAAVCATGLILCVAALAITLLSGRKTARG