Protein Info for GFF1539 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 49 (19 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 109 to 127 (19 residues), see Phobius details amino acids 155 to 173 (19 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 243 to 268 (26 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 30 to 290 (261 residues), 109.1 bits, see alignment E=1.1e-35

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 40% identity to bxe:Bxe_A2754)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (333 amino acids)

>GFF1539 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MRALKQHGLAGLALVAALVAPHGVGPYGHYILAMVLVYALVCMSMNVLMGMGGQISIGHA
AFWAIGAYTSAVLVSKLGAPLLLGVLAGGVLALLAGLLVALPALRVQGHYLAIATLGFAL
VVHQILYEWDAVTGGRSGMLVTRPSLWGIDLSSDLSYYHVVLAVCVLAAWLTHNFRQSMD
GLGLMALRMSPTAGQVMGIGRARSLFVAFGISAFLTGLSGALFGHLIGQLSTDSFTLTVS
LSFMTAAVVGGMNSVAGAILGGLFLALAPELLRSLKDAQNIVYGLILIGFMHFLPGGIAS
LPQRLGELWRHLRERRAAGEEAAAVPRQKGGVA