Protein Info for GFF1537 in Variovorax sp. SCN45

Annotation: FIG01127817: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 PF01134: GIDA" amino acids 21 to 50 (30 residues), 22.9 bits, see alignment (E = 1e-08) PF07992: Pyr_redox_2" amino acids 21 to 67 (47 residues), 27.5 bits, see alignment 5.4e-10 PF00890: FAD_binding_2" amino acids 21 to 58 (38 residues), 28 bits, see alignment 3.4e-10 PF12831: FAD_oxidored" amino acids 21 to 526 (506 residues), 320.6 bits, see alignment E=5.1e-99 PF13450: NAD_binding_8" amino acids 24 to 64 (41 residues), 27.1 bits, see alignment 1.1e-09

Best Hits

KEGG orthology group: None (inferred from 58% identity to bcv:Bcav_2722)

Predicted SEED Role

"FIG01127817: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>GFF1537 FIG01127817: hypothetical protein (Variovorax sp. SCN45)
MTTGQAHISAAIAPGTEIATDIVVIGGGLGGVSATLAAARQGARVVLVEELDWLGGQLTS
QGVPPDEHPWIESLSASQSYAALRHGIRDYYRTHMPLTEAARGSLRLNPGQGNVSTLCHE
PWVAVKVIDGLLAPHVAAGRVTVLRQHRLMDVQADGDRLRAVRVRDLPNDRERVLQAPMF
IDATEIGDVLEMAGVEHVFGAEAQARTGEPHALPEADPFDQQAITWCLAADYLPGEDHTI
DKPAAYERLKTLQLDCWPGPQFSWTLSDFVTHQPRERPLFVGPTDAESLYDLWHARRIAW
RLNFEAGAYASDITLANWPQMDYWEKPVVGVAPAAQAEALEEARQFSLAFFYWMQTDAPR
HDGGCGYRGLRLRGDVLGTRDGLAKQAYYREGRRIEAEFTVCEQHIGVAARPGKDGAQAF
FDSVGIGAYRIDLHPSTRGRNTVDIDSFPFQIPLGALLPVRVDNLLPACKNLGTTRVTNG
AYREHATEWSIGEACGSLAAFALARRQPPRAVRAQQALLREFQATLERQGVLLAWPSFGA
LTPTRRVGYVHAG