Protein Info for GFF152 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 TIGR04122: putative exonuclease, DNA ligase-associated" amino acids 6 to 332 (327 residues), 479.3 bits, see alignment E=2.3e-148

Best Hits

KEGG orthology group: K07577, putative mRNA 3-end processing factor (inferred from 89% identity to xau:Xaut_1471)

Predicted SEED Role

"mRNA 3-end processing factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (349 amino acids)

>GFF152 hypothetical protein (Xanthobacter sp. DMC5)
MRPEDLLCPSPKGLYSPAGDFYVDPTRAVPRAVITHGHSDHARAGHAHVLATRETLDIMA
LRMGPGFAGATQAVPYGEEITINGVKVSLHPAGHVLGSAQVRIEKDGLVIVVSGDYKDAA
DPTCAPFEPIRCHVFVSEATFGLPVFRHPPAAGEVDKLLASARIFPERTHIVGAYSLGKA
QRMMALIRRAGHDAPIYVHGALTNITDYYESCGMDFGEILPVKGAPKSAFAGAIVIAPPS
SMTDLWARRFADPITCFASGWMRVRARARQRGVELPLVVSDHADWDGLCASIRATGCEEL
WVTHGAEDALVHWAHTRQLRARPLHMVGYGEEDEEAVVLAPEGEKEAGG