Protein Info for PS417_00765 in Pseudomonas simiae WCS417

Annotation: filamentous hemagglutinin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2422 transmembrane" amino acids 2119 to 2142 (24 residues), see Phobius details amino acids 2154 to 2177 (24 residues), see Phobius details PF05860: TPS" amino acids 60 to 308 (249 residues), 191.2 bits, see alignment E=3.2e-60 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 82 to 180 (99 residues), 66.5 bits, see alignment (E = 1.5e-22) TIGR01731: adhesin HecA family 20-residue repeat (two copies)" amino acids 330 to 366 (37 residues), 15.1 bits, see alignment (E = 1.8e-06) amino acids 397 to 436 (40 residues), 16.6 bits, see alignment (E = 6e-07) amino acids 443 to 480 (38 residues), 8.9 bits, see alignment (E = 0.00016) amino acids 466 to 501 (36 residues), 15.4 bits, see alignment (E = 1.5e-06) amino acids 486 to 508 (23 residues), 9.2 bits, see alignment (E = 0.00013) amino acids 507 to 538 (32 residues), 6.7 bits, see alignment (E = 0.00077) amino acids 547 to 579 (33 residues), 7 bits, see alignment (E = 0.00064) amino acids 611 to 647 (37 residues), 19.1 bits, see alignment (E = 9.8e-08) amino acids 692 to 729 (38 residues), 17 bits, see alignment (E = 4.5e-07) amino acids 781 to 814 (34 residues), 9.8 bits, see alignment (E = 8.5e-05) amino acids 819 to 854 (36 residues), 18.4 bits, see alignment (E = 1.7e-07) amino acids 864 to 897 (34 residues), 16.7 bits, see alignment (E = 5.6e-07) amino acids 902 to 938 (37 residues), 16 bits, see alignment (E = 9.2e-07) amino acids 968 to 993 (26 residues), 12.3 bits, see alignment (E = 1.4e-05) amino acids 1049 to 1086 (38 residues), 8.5 bits, see alignment (E = 0.00021) amino acids 1109 to 1144 (36 residues), 14.2 bits, see alignment (E = 3.4e-06) amino acids 1128 to 1164 (37 residues), 11.1 bits, see alignment (E = 3.2e-05) amino acids 1283 to 1320 (38 residues), 7.9 bits, see alignment (E = 0.00032) amino acids 1753 to 1790 (38 residues), 7.7 bits, see alignment (E = 0.00037) PF13332: Fil_haemagg_2" amino acids 1670 to 1802 (133 residues), 17.6 bits, see alignment 3.5e-07 amino acids 1806 to 1872 (67 residues), 30 bits, see alignment (E = 5.5e-11) amino acids 1877 to 1940 (64 residues), 24.1 bits, see alignment (E = 3.6e-09) amino acids 1953 to 2031 (79 residues), 18.4 bits, see alignment (E = 2e-07)

Best Hits

Predicted SEED Role

"Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U8E0 at UniProt or InterPro

Protein Sequence (2422 amino acids)

>PS417_00765 filamentous hemagglutinin (Pseudomonas simiae WCS417)
MDVRQFAFLARQPSAALIPRNSFLGLPKRGLVLILANALFWQPLLARADGIVVSAPGTTV
GAAGNGVPVVNIATPNGSGLSHNQFKDYNVGPNGVILNNANGAVTNTQLGGYIVGNPNLK
GGAASVILNEVNGGSPSQLRGYTEVAGQSAKVIVANPYGVTCSGCGFINTPNVTLTTGKP
VLDANGQLQRYQVDGGAVTIDGQGLNASNVDRFEIITRSAKINAQINARELTVIAGRNDV
DARTLNATPRADDGSTKPELAIDSSALGGMYAGAIKLVGTEAGVGVKLDGTLAASGGDIQ
IDANGRLSMAQTQATGNVKVTAQNVDLTDKVYAAGNVQVTSAQALVNQKSVAAGQRIEIK
ATTVTNPGIIEAGVAPDNSRNTTGDLVVDAQTVNTTGNLLASRALAITAAQALTNQGAII
QAKNVSVSSAKLTNQGATARLFGEQALTVDAPAIVNLGGLIRFGDGQAATLTSASLDNRQ
GRIEMAGGSLVLDSRELNNNGGQVVANQLTVNAGNLNNQNGVLLAGVTTVNATNLDNSLK
GLIQADNGALNLTVANAFNNNQGFAQASTDLSLNAGTLSSNANGVLSANTGKLTLVTAQQ
LNNAQGRLQAGQGNVELHAANLDNQSGVIVGKQLLLDVNAGDIDNRAGRVLGDKLDVRAS
GLDNRNAGLLAGGAEGVSLLLKGPGQLLNAQGRIQSEGLLQLQGERLDNSAGILLGKTVD
VTAQRFTNSNKGALVSDGGDITFNVSDLLTNVDGVIDAGERNLLVKALTTLNNDGGTLRG
KRLDIAAQYLNNDNGQLLAGNLGLGYSGQSVTNRKGLILSGGAHTELDTASLDNQGGTVQ
GDTLTVTADKADNGSGGLMASLLGDLQLTVEALTNRGGKLFGKEQVTVSGATLDNSASGQ
ISGNVLNLTSRATLTNQGGLIEANQGLTLVGGNLDNSAGGQVRALGGANSSLDFSDQLNN
QNGTLEFASQALRLDTANLNNQGGMLQHAGSGLFHINTAGLTGSQGNIQGMGTADWAFGK
VVSLGRVQLNEVLTYKSAQGLTLKAGDRMASGKGLILDVASLDNGGELLSDGDLSITTTG
DITNSGRVSALQNLSVTANNLSQNGGRLAGSHTQLNLGGTLDNLGFLTARQQLDIAATQI
NNRGTLGAQGAVNLLASNGFTNAADSLLFSGGNMILRGNNFSNTYGDVYSQGNLSFAAID
GGPAAGFSNLSGTVESTGNISINAAFVENAKAEFELGQTLQGGRVEWLCGQHCDGHDSFK
RGQINIYQTYLESAVKDSAPARLVAGKDLLIQANMVQNRYSLMAANGNLGIVANDLLNQG
AGTRTGQNTIVIGTPYRIDLGYWDQMEYVDIPAFNAAVAAGNFDLARFEALKARSSDARF
AEVSNVTTWTDNTGPGYGATLQAGGTVNLNVARTLQNGTLHENTLAQLTGTLGDDQTGIP
VGGININLSKHANDVSAQSPGTVLPVAGVAPGGGFVPVDYTGTPFAPVDPTTAPNFQLPK
GEYGLFVKNVDPTSHYLIETNPEFTSLEGFFSSDYMLGKLGYSADNAWRRLGDGQYETRL
IRDAVLAQTGQRFLAGGLYSDADQFRYLMDNALASKDALRLSVGVTLTSQQVGALTHDIV
WMENRVVDGQTVLVPVLYLAQAESRNVRGNSLIQGRDLNLVTGGDLVNVGTLRASNNLSA
ASTGGSIYTGGLIEAGNNLSLLADDSIRNAMAGEIRGKQVSLATLKGDITNDTTAIQVRD
GAGMRTLRDSGAGTIVARENLAMDAHRDLTNRGALVAGNDASLVAGRDLNLVAASDTSVK
HEFSDGGHKSSITTDVKNLAATVTAGGNLNMKAGQDVNIIGSNATAGKDMNVQAVRDFNV
VSVGDTHNVEGREKDGKKRIKTSDEQTTQVASVLTAGRDFTSQAGRDTTLVASKISAGNE
AYLYSDRRLGLLAGQNSAYTLYDMKKNSGWGSKQTRRDEVTRVTHVGSEINAGGDIGLIS
GSDQLYQRAKLTSGKDVNILSGGSVTFEAVKDLHQESHTKSKSDLAWTSSSGRGNTDETL
RQTQIVAQGKFAIQAVDGLKVDINHIDQKTVAQTIDVMVKADPQLAWLKDAEKRGDVDWR
QVQEVHDSFKYSHSSLGQGAMLAIIIVVTALTAGAASGPLGAAAGASAGSGTAMAAAGSS
AMVTAGTASGVAAAGWGNVMITTALSSMAGTAAASTINNKGNLGKVFDDVTSADALKGYA
TGAAIAGFGAAFTNGWGRELTSDGNYKTVSYAERVKAYTANTALKGVLSGKDKKSWLTIA
GTGALTEVYEYSAGRGPDVRPGVDRDGGAKYDPLSGGYVPQVDEGGVIREGKNIGLNRTT
DCGSFYSVCHGTPVSNILNQVPGFNGFATLHDGWMINLEAYKKADMSLFENLGSMPPALI
VNYGALYDKYRPAIESEKKREN